Results 11 to 20 of about 8,999,941 (280)

Algebraic Databases

Theory and Applications of Categories, 2017
Databases have been studied category-theoretically for decades. The database schema -- whose purpose is to arrange high-level conceptual entities -- is generally modeled as a category or sketch. The data itself, often called an instance, is generally modeled as a set-valued functor, assigning to each conceptual entity a set of examples.
Schultz, Patrick, Spivak, David I., Vasilakopoulou, Christina, Wisnesky, Ryan   +3 more
openaire   +3 more sources

Southern African Treatment Resistance Network (SATuRN) RegaDB HIV drug resistance and clinical management database: supporting patient management, surveillance and research in southern Africa [PDF]

, 2014
Substantial amounts of data have been generated from patient management and academic exercises designed to better understand the human immunodeficiency virus (HIV) epidemic and design interventions to control it.
Bester, Armand, Chetty, Terusha, Danaviah, Siva, De Oliveira, Tulio, Goedhals, Dominique, Iwuji, Collins, Lessells, Richard, Manasa, Justen, McGrath, Nuala, Moodley, Pravi, Naidu, Kevindra, Rossouw, Theresa, Seebregts, Christopher J, Singh, Lavanya, Skingsley, Andrew, Stott, Katharine, Van Vuuren, Cloete, Van Zyl, Gert   +17 more
core   +3 more sources

DrugBank 5.0: a major update to the DrugBank database for 2018

Nucleic Acids Res., 2017
DrugBank (www.drugbank.ca) is a web-enabled database containing comprehensive molecular information about drugs, their mechanisms, their interactions and their targets.
D. Wishart, Y. D. Feunang, Anchi Guo, Elvis J. Lo, A. Marcu, J. Grant, Tanvir Sajed, Daniel Johnson, Carin Li, Zinat Sayeeda, Nazanin Assempour, Ithayavani Iynkkaran, Yifeng Liu, Adam Maciejewski, Nicola Gale, Alex Wilson, Lucy Chin, Ryan Cummings, Diana Le, Allison Pon, Craig Knox, Michael Wilson   +21 more
semanticscholar   +1 more source

Searching a biomedical database from Bulgaria : the ABS database [PDF]

, 2007
The University of Sofia, Bulgaria, disseminates local biomedical literature (1994 to present) through a free online database, ABS. We systematically searched ABS to identify citations to controlled trials and find what proportion of these studies are to
Abhijnhan, A., Adams, C.E., Surcheva, Z., Wright, J.M.   +3 more
core   +2 more sources

DoD: Database of Databases – Updated Molecular Biology Databases

In Silico Biology: Journal of Biological Systems Modeling and Multi-Scale Simulation, 2005
Database of Databases (DoD) is a collection of molecular biology databases extracted from Nucleic Acids Research, 2005 Database issue. DoD is constructed using javascript and html code. The 14 categories of 719 databases are provided with a search option, keyword help and database description linked to respective pages.
P Ajay, Babu, Radha, Boddepalli, V Vasantha, Lakshmi, G Nageswara, Rao   +3 more
openaire   +2 more sources

Finding needles in haystacks: linking scientific names, reference specimens and molecular data for Fungi [PDF]

, 2014
DNA phylogenetic comparisons have shown that morphology-based species recognition often underestimates fungal diversity. Therefore, the need for accurate DNA sequence data, tied to both correct taxonomic names and clearly annotated specimen data, has ...
Abarenkov, K, Aime, MC, Ariyawansa, HA, Bidartondo, M, Boekhout, T, Buyck, B, Cai, Q, Cardinali, G, Chen, J, Crespo, A, Crous, PW, Damm, U, De Beer, ZW, Dentinger, BTM, Dieguez Uribeondo, J, Divakar, PK, Duenas, M, Duong, V, Feau, N, Federhen, S, Fliegerova, K, Garcia, MA, Ge, Z-W, Griffith, G, Groenewald, JZ, Groenewald, M, Grube, M, Gryzenhout, M, Gueidan, C, Guo, L, Hambleton, S, Hamelin, R, Hansen, K, Hofstetter, V, Hong, S-B, Houbraken, J, Hughes, K, Hyde, KD, Inderbitzin, P, Irinyi, L, Johnston, PR, Karunarathna, SC, Kirk, PM, Koljalg, U, Kovacs, GM, Kraichak, E, Krizsan, K, Kurtzman, CP, Larsson, K-H, Leavitt, S, Letcher, PM, Liimatainen, K, Liu, J-K, Lodge, DJ, Luangsa-ard, JJ, Lumbsch, HT, Maharachchikumbura, SSN, Manamgoda, D, Martin, MP, Meyer, W, Miller, AN, Minnis, AM, Moncalvo, J-M, Mule, G, Nakasone, KK, Nilsson, RH, Niskanen, T, Olariaga, I, Papp, T, Petkovits, T, Pino-Bodas, R, Powell, MJ, Raja, HA, Redecker, D, Robbertse, B, Robert, V, Sarmiento-Ramirez, JM, Schoch, CL, Seifert, KA, Shrestha, B, Stenroos, S, Stielow, B, Subbarao, KV, Suh, S-O, Tanaka, K, Tedersoo, L, Teresa Telleria, M, Udayanga, D, Untereiner, WA, Vagvoelgyi, C, Visagie, C, Voigt, K, Walker, DM, Weir, BS, Weiss, M, Wijayawardene, NN, Wingfield, MJ, Xu, JP, Yang, ZL, Zhang, N, Zhuang, W-Y   +100 more
core   +2 more sources

The PRIDE database and related tools and resources in 2019: improving support for quantification data

Nucleic Acids Res., 2018
The PRoteomics IDEntifications (PRIDE) database (https://www.ebi.ac.uk/pride/) is the world’s largest data repository of mass spectrometry-based proteomics data, and is one of the founding members of the global ProteomeXchange (PX) consortium.
Yasset Pérez-Riverol, A. Csordas, Jingwen Bai, Manuel Bernal Llinares, Suresh Hewapathirana, D. J. Kundu, Avinash Inuganti, J. Griss, Gerhard Mayer, M. Eisenacher, Enrique Pérez, J. Uszkoreit, J. Pfeuffer, Timo T. Sachsenberg, Şule Yılmaz, Shivani Tiwary, J. Cox, E. Audain, Mathias Walzer, Andrew F. Jarnuczak, Tobias Ternent, A. Brazma, J. Vizcaíno   +22 more
semanticscholar   +1 more source

MisPred: a resource for identification of erroneous protein sequences in public databases [PDF]

, 2013
Correct prediction of the structure of protein-coding genes of higher eukaryotes is still a difficult task; therefore, public databases are heavily contaminated with mispredicted sequences.
Nagy, Alinda, Patthy, László
core   +1 more source

The Pfam protein families database in 2019

Nucleic Acids Res., 2018
The last few years have witnessed significant changes in Pfam (https://pfam.xfam.org). The number of families has grown substantially to a total of 17,929 in release 32.0.
Sara El-Gebali, Jaina Mistry, A. Bateman, S. Eddy, Aurélien Luciani, Simon C. Potter, Matloob Qureshi, Lorna J. Richardson, Gustavo A. Salazar, A. Smart, E. Sonnhammer, L. Hirsh, L. Paladin, Damiano Piovesan, Silvio C. E. Tosatto, R. Finn   +15 more
semanticscholar   +1 more source

Database resources of the National Center for Biotechnology Information

Nucleic Acids Res., 2017
The National Center for Biotechnology Information (NCBI) provides a large suite of online resources for biological information and data, including the GenBank® nucleic acid sequence database and the PubMed database of citations and abstracts for ...
Richa Tanya Jeff Dennis A Colleen Evan Devon J Rodney St Agarwala Barrett Beck Benson Bollin Bolton Bourexi, R. Agarwala, Tanya Barrett, J. Beck, Dennis A. Benson, Colleen J. Bollin, Evan E. Bolton, Devon Bourexis, J. R. Brister, S. Bryant, Kathi Canese, Mark Cavanaugh, Chad Charowhas, Karen Clark, I. Dondoshansky, M. Feolo, Lawrence Fitzpatrick, Kathryn Funk, Lewis Y. Geer, V. Gorelenkov, Alan Graeff, W. Hlavina, Brad Holmes, Mark Johnson, B. Kattman, Viatcheslav Khotomlianski, Avi Kimchi, Michael Kimelman, Masato Kimura, P. Kitts, W. Klimke, A. Kotliarov, S. Krasnov, A. Kuznetsov, M. Landrum, D. Landsman, S. Lathrop, Jennifer M. Lee, Carl Leubsdorf, Zhiyong Lu, Thomas L. Madden, Aron Marchler-Bauer, Adriana Malheiro, Peter A. Meric, I. Karsch-Mizrachi, Anatoly Mnev, Terence D. Murphy, R. Orris, J. Ostell, Christopher O'Sullivan, Vasuki Palanigobu, A. Panchenko, Lon Phan, Borys Pierov, K. Pruitt, K. Rodarmer, E. Sayers, Valerie A. Schneider, C. Schoch, G. Schuler, S. Sherry, Karanjit Siyan, Alexandra Soboleva, Vladimir Soussov, G. Starchenko, T. Tatusova, F. Thibaud-Nissen, K. Todorov, B. Trawick, D. Vakatov, Minghong Ward, E. Yaschenko, A. Zasypkin, Kerry Zbicz   +73 more
semanticscholar   +1 more source