Results 111 to 120 of about 3,685 (173)

Scalable Genome Assembly through Parallel de Bruijn Graph Construction for Multiple k-mers. [PDF]

Sci Rep, 2019
Mahadik K, Wright C, Kulkarni M, Bagchi S, Chaterji S.   +4 more
europepmc   +1 more source

A space and time-efficient index for the compacted colored de Bruijn graph. [PDF]

Bioinformatics, 2018
Almodaresi F, Sarkar H, Srivastava A, Patro R.   +3 more
europepmc   +1 more source

Explorer: efficient DNA coding by De Bruijn graph toward arbitrary local and global biochemical constraints. [PDF]

Brief Bioinform
Dou C, Yang Y, Zhu F, Li B, Duan Y.
europepmc   +1 more source

deBGR: an efficient and near-exact representation of the weighted de Bruijn graph. [PDF]

Bioinformatics, 2017
Pandey P, Bender MA, Johnson R, Patro R.
europepmc   +1 more source

Amino acid based de Bruijn graph algorithm for identifying complete coding genes from metagenomic and metatranscriptomic short reads. [PDF]

Nucleic Acids Res, 2019
Liu J, Lian Q, Chen Y, Qi J.
europepmc   +1 more source

GRIDSS: sensitive and specific genomic rearrangement detection using positional de Bruijn graph assembly. [PDF]

Genome Res, 2017
Cameron DL, Schröder J, Penington JS, Do H, Molania R, Dobrovic A, Speed TP, Papenfuss AT.   +7 more
europepmc   +1 more source

Erratum to: A representation of a compressed de Bruijn graph for pan-genome analysis that enables search. [PDF]

Algorithms Mol Biol, 2016
Beller T, Ohlebusch E.
europepmc   +1 more source

A representation of a compressed de Bruijn graph for pan-genome analysis that enables search. [PDF]

Algorithms Mol Biol, 2016
Beller T, Ohlebusch E.
europepmc   +1 more source

What is the difference between the breakpoint graph and the de Bruijn graph? [PDF]

BMC Genomics, 2014
Lin Y, Nurk S, Pevzner PA.
europepmc   +1 more source

Utilizing de Bruijn graph of metagenome assembly for metatranscriptome analysis. [PDF]

Bioinformatics, 2016
Ye Y, Tang H.
europepmc   +1 more source