Results 121 to 130 of about 3,685 (173)

A novel codon-based de Bruijn graph algorithm for gene construction from unassembled transcriptomes. [PDF]

Genome Biol, 2016
Peng G, Ji P, Zhao F.
europepmc   +1 more source

Reference-free compression of high throughput sequencing data with a probabilistic de Bruijn graph. [PDF]

BMC Bioinformatics, 2015
Benoit G, Lemaitre C, Lavenier D, Drezen E, Dayris T, Uricaru R, Rizk G.   +6 more
europepmc   +1 more source

Space-efficient and exact de Bruijn graph representation based on a Bloom filter. [PDF]

Algorithms Mol Biol, 2013
Chikhi R, Rizk G.
europepmc   +1 more source

A de Bruijn graph approach to the quantification of closely-related genomes in a microbial community. [PDF]

J Comput Biol, 2012
Wang M, Ye Y, Tang H.
europepmc   +1 more source

Sharkmer: repurposing PCR primers for targeted genome assembly using in silico PCR. [PDF]

Bioinformatics
Dunn CW, Church SH.
europepmc   +1 more source

IDBA-tran: a more robust de novo de Bruijn graph assembler for transcriptomes with uneven expression levels. [PDF]

Bioinformatics, 2013
Peng Y, Leung HC, Yiu SM, Lv MJ, Zhu XG, Chin FY.   +5 more
europepmc   +1 more source

MetaFX: feature extraction from whole-genome metagenomic sequencing data. [PDF]

Bioinformatics
Ivanov A, Popov V, Morozov M, Olekhnovich E, Ulyantsev V.   +4 more
europepmc   +1 more source

MGA: a tool for haplotype-mixed assembly of long and accurate reads. [PDF]

Genome Biol
Zhang Z, Fedarko MW, Bankevich A, Pevzner PA.   +3 more
europepmc   +1 more source

Lancet2: Improved and accelerated somatic variant calling with joint multi-sample local assembly graphs. [PDF]

NAR Genom Bioinform
Musunuri RL, Zhu B, Clarke WE, Hooper W, Chu T, Shelton J, Corvelo A, Chung D, Sundar S, Novak AM, Paten B, Zody MC, Robine N, Narzisi G.   +13 more
europepmc   +1 more source

Elucidating Transitions of <i>k</i>-mer-Based Objects Across <i>k</i>-mer Sizes. [PDF]

J Comput Biol
Park A, Koslicki D.
europepmc   +1 more source