Metagenomic analysis shows the presence of bacteria related to free-living forms of sulfur-Oxidizing Chemolithoautotrophic Symbionts in the rhizosphere of the seagrass Zostera marina [PDF]
, 2018 Seagrasses play an important role as ecosystem engineers; they provide shelter to many animals and improve water quality by filtering out nutrients and by controlling pathogens.
Cúcio, Catarina +3 more
core +4 more sources
Impact of Ammonium on Syntrophic Organohalide-Respiring and Fermenting Microbial Communities [PDF]
, 2016 Citation: Delgado, A. G., Fajardo-Williams, D., Kegerreis, K. L., Parameswaran, P., & Krajmalnik-Brown, R. (2016). Impact of Ammonium on Syntrophic Organohalide-Respiring and Fermenting Microbial Communities. Msphere, 1(2), 10.
Anca G. Delgado +5 more
core +2 more sources
Genome sequence of the organohalide-respiring Dehalogenimonas alkenigignens type strain (IP3-3(T)) [PDF]
, 2016 Dehalogenimonas alkenigignens IP3-3(T) is a strictly anaerobic, mesophilic, Gram negative staining bacterium that grows by organohalide respiration, coupling the oxidation of H-2 to the reductive dehalogenation of polychlorinated alkanes.
Bowman, Kimberly S. +7 more
core +1 more source
Evaluating techniques for metagenome annotation using simulated sequence data [PDF]
, 2016 The advent of next-generation sequencing has allowed huge amounts of DNA sequence data to be produced, advancing the capabilities of microbial ecosystem studies. The current challenge is identifying from which microorganisms and genes the DNA originated.
Garcia-Etxebarria +5 more
core +3 more sources
Microbiome, 2022 Background The deep sea harbors the majority of the microbial biomass in the ocean and is a key site for organic matter (OM) remineralization and storage in the biosphere.
Rulong Liu +15 more
doaj +1 more source
Evolution of Phototrophy in the Chloroflexi Phylum Driven by Horizontal Gene Transfer [PDF]
, 2018 The evolutionary mechanisms behind the extant distribution of photosynthesis is a point of substantial contention. Hypotheses range from the presence of phototrophy in the last universal common ancestor and massive gene loss in most lineages, to a later ...
James Hemp +5 more
core +4 more sources
mBio, 2017 The deep marine subsurface is one of the largest unexplored biospheres on Earth and is widely inhabited by members of the phylum Chloroflexi. In this report, we investigated genomes of single cells obtained from deep-sea sediments of the Peruvian Margin,
Holly L. Sewell +2 more
doaj +1 more source
International Journal of Systematic and Evolutionary Microbiology, 2013 Six obligately anaerobic bacterial isolates (195T, CBDB1, BAV1, VS, FL2 and GT) with strictly organohalide-respiring metabolisms were obtained from chlorinated solvent-contaminated aquifers, contaminated and uncontaminated river sediments or anoxic digester sludge. Cells were non-motile with a disc-shaped morphology, 0.3–1 µm in diameter and 0.1–0.2 µm
Löffler +9 more
openaire +2 more sources
Exploring the Abundance, Metabolic Potential, and Gene Expression of Subseafloor Chloroflexi in Million-year-old Oxic and Anoxic Abyssal Clay [PDF]
, 2020 Chloroflexi are widespread in subsurface environments, and recent studies indicate that they represent a major fraction of the communities in subseafloor sediment.
D\u27Hondt, Steven +3 more
core +1 more source
Soil Microbial Indicators within Rotations and Tillage Systems [PDF]
, 2021 Recent advancements in agricultural metagenomics allow for characterizing microbial indicators of soil health brought on by changes in management decisions, which ultimately affect the soil environment.
Behnke, Gevan D. +5 more
core +1 more source