Results 1 to 10 of about 19,711 (309)

HycDemux: a hybrid unsupervised approach for accurate barcoded sample demultiplexing in nanopore sequencing

Genome Biology, 2023
DNA barcodes enable Oxford Nanopore sequencing to sequence multiple barcoded DNA samples on a single flow cell. DNA sequences with the same barcode need to be grouped together through demultiplexing.
Renmin Han, Junhai Qi, Yang Xue, Xiujuan Sun, Fa Zhang, Xin Gao, Guojun Li   +6 more
doaj   +2 more sources

MysteryMaster: scraping the bottom of the barrel of barcoded Oxford nanopore reads [PDF]

BMC Bioinformatics
Background The high error rate associated with Oxford Nanopore sequencing technology adversely affects demultiplexing. To improve demultiplexing and reduce unclassified reads from nanopore sequencing data, we developed MysteryMaster, a demultiplexer that
Abdolrahman Khezri, Sverre Branders, Anurag Basavaraj Bellankimath, Jawad Ali, Crystal Chapagain, Fatemeh Asadi, Manfred G. Grabherr, Rafi Ahmad   +7 more
doaj   +2 more sources

Ensemblex: an accuracy-weighted ensemble genetic demultiplexing framework for population-scale scRNAseq sample pooling [PDF]

Genome Biology
Multiplexing samples from distinct individuals prior to sequencing is a promising step towards achieving population-scale single-cell RNA sequencing by reducing the restrictive costs of the technology.
Michael R. Fiorini, Saeid Amiri, Allison A. Dilliott, Cristine M. Yde Ohki, Lukasz Smigielski, Susanne Walitza, Edward A. Fon, Edna Grünblatt, Rhalena A. Thomas, Sali M. K. Farhan   +9 more
doaj   +2 more sources

Passive demultiplexed two-photon state generation from a quantum dot [PDF]

npj Quantum Information
High-purity multi-photon states are essential for photonic quantum computing. Among existing platforms, semiconductor quantum dots offer a promising route to scalable and deterministic multi-photon state generation.
Yusuf Karli, Iker Avila Arenas, Christian Schimpf, Ailton Jose Garcia Junior, Santanu Manna, Florian Kappe, René Schwarz, Gabriel Undeutsch, Maximilian Aigner, Melina Peter, Saimon F. Covre da Silva, Armando Rastelli, Gregor Weihs, Vikas Remesh   +13 more
doaj   +2 more sources

Probability of stealth multiplets in sample-multiplexing for droplet-based single-cell analysis [PDF]

BMC Genomics
Background One of the technical limits of droplet-based single-cell RNA sequencing (scRNA-seq) is the presence of multiplets, i.e. droplets that capture multiple cells.
Fumio Nakaki, James Sharpe
doaj   +2 more sources

Spatial-Light-Modulator-Based Multichannel Data Transmission by Vortex Beams of Various Orders

Sensors, 2021
We report an atmospheric multichannel data transmission system with channel separation by vortex beams of various orders, including half-integer values. For the demultiplexing of the communication channels, a multichannel diffractive optical element (DOE)
Svetlana N. Khonina, Sergey V. Karpeev, Muhammad A. Butt   +2 more
doaj   +1 more source

Cylindrical vector beams demultiplexing communication based on a vectorial diffractive optical element

Nanophotonics, 2023
Cylindrical vector beams with polarization singularities, transmission stability and turbulence resilient, are orthogonally structured light beams providing new degrees of freedom for multiplexing optical communications.
Cao Mengwei, Xie Zhenwei, Zhong Yanan, Lei Ting, Zhang Wanlong, Liu Shutian, Yuan Xiaocong   +6 more
doaj   +1 more source

Automated Adaptation and Stabilization of a Tunable WDM Polarization-Independent Receiver on Active Silicon Photonic Platform

IEEE Photonics Journal, 2020
We demonstrate automated adaptation, and stabilization of a silicon photonic wavelength-division multiplexing (WDM), polarization-independent receiver.
Minglei Ma, Hossam Shoman, Sudip Shekhar, Nicolas A. F. Jaeger, Lukas Chrostowski   +4 more
doaj   +1 more source

Plasmonic Demultiplexer and Guiding [PDF]

ACS Nano, 2010
17 pages, 5 ...
Zhao, Chenglong, Zhang, Jiasen
openaire   +3 more sources

Evaluation of genetic demultiplexing of single-cell sequencing data from model species

Life Science Alliance, 2023
The authors demonstrate that scRNA-seq sample pooling followed by genetics-based separation of individuals is an effective means to identify individual samples in a variety of commonly studied species.
Joseph F Cardiello, Alberto Joven Araus, Sarantis Giatrellis, Clement Helsens, András Simon, Nicholas D Leigh   +5 more
doaj   +1 more source