Results 111 to 120 of about 66,141 (268)

Time of divergence among D. elongatus populations based on Bayesian coalescent estimation.

, 2012
Time of divergence among populations are in million years. Bayesian coalescent estimation of time to most recent common ancestor (TMRCA) with 95% highest posterior density modeled assuming a relaxed molecular clock as implemented in BEAST are shown.
Natalia Rosetti (146495), Maria Isabel Remis (146497)   +1 more
core   +1 more source

From mice to humans—divergent strategies for intestinal homeostasis and regeneration

FEBS Letters, EarlyView.
Recent advances such as organoid genome editing, xenotransplantation, imaging, and whole‐genome sequencing have enabled direct studies of human intestinal stem cells (ISCs). These studies reveal species‐specific features, including slower ISC proliferation, distinct injury responses, slower somatic mutation accumulation in humans, and an inverse ...
Keiko Ishikawa, Shinya Sugimoto, Toshiro Sato   +2 more
wiley   +1 more source

Indoor WLAN localization via adaptive Lasso Bayesian inference and convex optimization

Cogent Engineering, 2020
There has been growing interest in indoor positioning system technologies due to the important role of real-time indoor positioning services in modern technologies such as security services and emergency healthcare.
Osamah A. Abdullah, Mohammed Aal-nouman, Aya Al-joudi   +2 more
doaj   +1 more source

Modelling stem cell differentiation related processes—A practical overview for biologists

FEBS Letters, EarlyView.
Stem cell differentiation is complex and difficult to control experimentally. This review introduces suitable computational modelling approaches that can support stem cell research, from mechanistic ODE and abstract models to multiscale and deep learning methods.
Ricco Zeegelaar, Xinqi Yan, Lucas Jansen Klomp, Stefano Schivo, Janine N. Post   +4 more
wiley   +1 more source

Plastid phylogenomics reveals evolutionary relationships in the mycoheterotrophic orchid genus Dipodium and provides insights into plastid gene degeneration

Frontiers in Plant Science
The orchid genus Dipodium R.Br. (Epidendroideae) comprises leafy autotrophic and leafless mycoheterotrophic species, with the latter confined to sect. Dipodium. This study examined plastome degeneration in Dipodium in a phylogenomic and temporal context.
Stephanie Goedderz, Stephanie Goedderz, Mark A. Clements, Stephen J. Bent, James A. Nicholls, Vidushi S. Patel, Darren M. Crayn, Philipp M. Schlüter, Katharina Nargar, Katharina Nargar   +9 more
doaj   +1 more source

Phase change for the accuracy of the median value in estimating divergence time

BMC Bioinformatics, 2013
We prove that for general models of random gene-order evolution of k ≥ 3 genomes, as the number of genes n goes to ∞, the median value approximates k times the divergence time if the number of rearrangements is less than cn/4 for any c
Arash Jamshidpey, David Sankoff
openaire   +2 more sources

Divergence time estimation between cephalochordates.

, 2020
The timetree was generated using the RelTime method. Two calibration points were used: the divergence times between vertebrates and cephalochordates (603.55–697 Ma) and between cyclostomes and gnathostomes (412.75–462.50 Ma) as proposed by Zhang et al ...
Stephanie Bertrand (5649073), Hector Escriva (17387), Lucie Subirana (796193), Viviana Farstey (542732)   +3 more
core   +1 more source

Design and analysis strategies for robust microbiome ageing research

FEBS Letters, EarlyView.
The gut microbiome changes with age and associates with age‐related morbidity and mortality, establishing it as a potential biomarker and intervention target for ageing. Realising this potential requires methodological rigour, yet distinguishing biological signals from methodological artefacts remains challenging across cohorts. This review provides an
Mark Olenik, İsmail Güderer, Yi Wang, Tayyaba Alvi, Prasoon Pandey, Handan Melike Dönertaş   +5 more
wiley   +1 more source

Accounting for Calibration Uncertainty in Phylogenetic Estimation of Evolutionary Divergence Times

Systematic Biology, 2009
The estimation of phylogenetic divergence times from sequence data is an important component of many molecular evolutionary studies. There is now a general appreciation that the procedure of divergence dating is considerably more complex than that initially described in the 1960s by Zuckerkandl and Pauling (1962, 1965).
Ho, Simon, Phillips, Matthew
openaire   +3 more sources

Divergence time estimation of HPV16 complete genome variants.

, 2018
A Bayesian MCMC method was used to calculate the divergence times of HPV16 complete genome variants from their most recent common ancestors, as described in the methods.
Robert D. Burk (35757), Rob DeSalle (175611), Paul K. S. Chan (271343), Mark Schiffman (106112), Zigui Chen (153298), Gary M. Clifford (5921447), Charles E. Wood (513584), Rolando Herrero (106155), Julio C. Ruiz (489263)   +8 more
core   +1 more source