Results 21 to 30 of about 2,136,183 (288)
psp-codes/adaptive-conformation-sampling: Public Release
, 2021 This is the public release of the codes for the project detailed in the manuscript titled "Adaptive Stochastic Optimization to Improve Protein Conformation Sampling".
psp-codes
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Reversible $$G^k$$-codes with applications to DNA codes
Designs, Codes and Cryptography, 2022 In this paper, we give a matrix construction method for designing DNA codes that come from group matrix rings. We show that with our construction one can obtain reversible $G^k$-codes of length $kn,$ where $k, n \in \mathbb{N},$ over the finite commutative Frobenius ring $R.$ We employ our construction method to obtain many DNA codes over $\mathbb{F}_4$
Adrian Korban +2 more
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Multicolor chromosome bar codes [PDF]
, 2006 Chromosome bar codes are multicolor banding patterns produced by fluorescence in situ hybridization (FISH) with differentially labeled and pooled sub-regional DNA probes.
Müller, Stefan, Wienberg, Johannes
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On cyclic DNA codes over the rings Z4 + wZ4 and Z4 + wZ4 + vZ4 + wvZ4
Biomath, 2017 The structures of cyclic DNA codes of odd length over the finite ringsВ R = Z4 + wZ4, w^2 = 2 and S = Z4 + wZ4 + vZ4 + wvZ4; w^2 = 2; v^2 =v; wv = vw are studied.
Abdullah Dertli, Yasemin Cengellenmis
doaj +1 more source
DNA Code from Cyclic and Skew Cyclic Codes over
Entropy, 2023 The main motivation of this work is to study and obtain some reversible and DNA codes of length n with better parameters. Here, we first investigate the structure of cyclic and skew cyclic codes over the chain ring R:=F4[v]/⟨v3⟩.
Om Prakash +4 more
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BRICS Report Series, 1998 We discuss a model for the evolutionary distance between two coding DNA sequences which specializes to the DNA/protein model proposed in Hein [3]. We discuss the DNA/protein model in details and present a quadratic time algorithm that computes an optimal alignment of two coding DNA sequences in the model under the assumption of affine gap cost.
Christian N. S. Pedersen +2 more
openaire +3 more sources
Short Low-Rate Non-Binary Turbo Codes [PDF]
, 2012 A serial concatenation of an outer non-binary turbo code with different inner binary codes is introduced and analyzed. The turbo code is based on memory-1 time-variant recursive convolutional codes over high order fields.
Paolini, Enrico +9 more
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Adaptive nested trellis decoding for block codes. [PDF]
, 1994 A new adaptive trellis decoding technique for block codes is proposed. The technique is based on an encoding technique which allows the design of almost all known linear codes together with their minimal trellises.
Markarian, G. S. +5 more
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Towards long double-stranded chains and robust DNA-based data storage using the random code system
Frontiers in Genetics, 2023 DNA has become a popular choice for next-generation storage media due to its high storage density and stability. As the storage medium of life’s information, DNA has significant storage capacity and low-cost, low-power replication and transcription ...
Xu Yang +5 more
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DNA Codes Over the Ring F₄[
IEEE Access, 2020 In this paper, we develop the method for constructing DNA codes of odd length over the finite chain ring $R=\mathbb {F}_{4}[u]/\langle u^{3}\rangle $ , which plays an important role in genetics, bioengineering and DNA computing.
Jie Liu, Hualu Liu
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