DNA Self-Assembly and Computation Studied with a Coarse-grained Dynamic Bonded Model [PDF]
arXiv, 2012 We study DNA self-assembly and DNA computation using a coarse-grained DNA model within the directional dynamic bonding framework {[}C. Svaneborg, Comp. Phys. Comm. 183, 1793 (2012){]}. In our model, a single nucleotide or domain is represented by a single interaction site. Complementary sites can reversibly hybridize and dehybridize during a simulation.
arxiv
Investigation of DNA Hybridization on Nano-Structured Plasmonic Surfaces for Identifying Nasopharyngeal Viruses. [PDF]
Bioengineering (Basel), 2023 Li SS +8 more
europepmc +1 more source
Graphene Oxide-Functionalized Thread-Based Electrofluidic Approach for DNA Hybridization. [PDF]
ACS Omega, 2023 Wu L, Manchanda A, Gupta V, Paull B.
europepmc +1 more source
DNA-Inspired Information Concealing [PDF]
arXiv, 2009 Protection of the sensitive content is crucial for extensive information sharing. We present a technique of information concealing, based on introduction and maintenance of families of repeats. Repeats in DNA constitute a basic obstacle for its reconstruction by hybridization.
arxiv
Beneficial and detrimental effects of non-specific binding during DNA hybridization. [PDF]
Biophys J, 2023 Phan TTM, Phan TM, Schmit JD.
europepmc +1 more source
Controllable DNA hybridization by host-guest complexation-mediated ligand invasion. [PDF]
Nat Commun, 2022 Xiao L +6 more
europepmc +1 more source
Breakdown of thermodynamic equilibrium for DNA hybridization in microarrays
, 2010 Test experiments of hybridization in DNA microarrays show systematic deviations from the equilibrium isotherms. We argue that these deviations are due to the presence of a partially hybridized long-lived state, which we include in a kinetic model ...
Baiesi, M. +3 more
core +1 more source
Design of High-Sensitivity Surface Plasmon Resonance Sensor Based on Nanostructured Thin Films for Effective Detection of DNA Hybridization [PDF]
Plasmonics, 2022 Ghayoor R, Zangenehzadeh S, Keshavarz A.
europepmc +2 more sources
Regulating DNA-Hybridization Using a Chemically Fueled Reaction Cycle. [PDF]
J Am Chem Soc, 2022 Stasi M +8 more
europepmc +1 more source
DNA Calorimetric Force Spectroscopy at Single Base Pair Resolution [PDF]
arXivDNA hybridization is a fundamental reaction with wide-ranging applications in biotechnology. The nearest-neighbor (NN) model provides the most reliable description of the energetics of duplex formation. Most DNA thermodynamics studies have been done in melting experiments in bulk, of limited resolution due to ensemble averaging.
arxiv