Distinguishing regional from within-codon rate heterogeneity in DNA sequence alignments [PDF]
, 2009 We present an improved phylogenetic factorial hidden Markov model (FHMM) for detecting two types of mosaic structures in DNA sequence alignments, related to (1) recombination and (2) rate heterogeneity.
Husmeier, D. +4 more
core +5 more sources
Addressing the shortcomings of three recent bayesian methods for detecting interspecific recombination in DNA sequence alignments [PDF]
, 2008 We address a potential shortcoming of three probabilistic models for detecting interspecific recombination in DNA sequence alignments: the multiple change-point model (MCP) of Suchard et al. (2003), the dual multiple change-point model (DMCP) of Minin et
Husmeier, D. +3 more
core +4 more sources
Improved Bayesian methods for detecting recombination and rate heterogeneity in DNA sequence alignments [PDF]
, 2011 DNA sequence alignments are usually not homogeneous. Mosaic structures may result as a consequence of recombination or rate heterogeneity. Interspecific recombination, in which DNA subsequences are transferred between different (typically viral or ...
Mantzaris, Alexander Vassilios +1 more
core +3 more sources
A targeting sequence directs DNA methyltransferase to sites of DNA replication in mammalian nuclei [PDF]
, 1992 Tissue-specific patterns of methylated deoxycytidine residues in the mammalian genome are preserved by postreplicative methylation of newly synthesized DNA. DNA methyltransferase (MTase) is here shown to associate with replication foci during S phase but
Heinz-Ulrich Weier +14 more
core +2 more sources
Rapid DNA Sequencing Technology Based on the Sanger Method for Bacterial Identification
Sensors, 2022 Antimicrobial resistance, a global health concern, has been increasing due to inappropriate use of antibacterial agents. To facilitate early treatment of sepsis, rapid bacterial identification is imperative to determine appropriate antibacterial agent ...
Shunsuke Furutani +4 more
doaj +1 more source
On the first occurrence of Xiphinema santos in Brazil
Helminthologia, 2020 Based on morphology, measurements of juveniles and female specimens and sequences of the D2/ D3 expansion 28S rDNA gene and ITS1 analysis by DNA barcode technique, a Xiphinema americanum group species associated with olive trees from state of Sao Paulo ...
Oliveira C. M. G. +2 more
doaj +1 more source
Review on the Application of Machine Learning Algorithms in the Sequence Data Mining of DNA
Frontiers in Bioengineering and Biotechnology, 2020 Deoxyribonucleic acid (DNA) is a biological macromolecule. Its main function is information storage. At present, the advancement of sequencing technology had caused DNA sequence data to grow at an explosive rate, which has also pushed the study of DNA ...
Aimin Yang +5 more
doaj +1 more source
Zinc finger recombinases with adaptable DNA sequence specificity [PDF]
, 2011 Site-specific recombinases have become essential tools in genetics and molecular biology for the precise excision or integration of DNA sequences. However, their utility is currently limited to circumstances where the sites recognized by the recombinase ...
Proudfoot, C. +19 more
core +1 more source
The white spot syndrome virus DNA genome sequence [PDF]
, 2001 White spot syndrome virus (WSSV) is at present a major scourge to worldwide shrimp cultivation. We have determined the entire sequence of the double-stranded, circular DNA genome of WSSV, which contains 292,967 nucleotides encompassing 184 major open ...
van Hulten, Mariëlle C W +11 more
core +1 more source
Computational analysis of CpG site DNA methylation [PDF]
, 2013 This thesis was submitted for the degree of Doctor of Philosophy and awarded by Brunel University.Epigenetics is the study of factors that can change DNA and passed to next generation without change to DNA sequence.
Ghorbani, Mohammadmersad
core +7 more sources