Results 41 to 50 of about 6,076,909 (260)

AffinityVAE: A multi-objective model for protein-ligand affinity prediction and drug design

open access: yes, 2023
In the prediction of protein-ligand affinity, the traditional methods require a large amount of computing resources, and have certain limitations in predicting and simulating the structural changes.
Yu, X   +6 more
core   +1 more source

WideDTA: prediction of drug-target binding affinity

open access: yesCoRR, 2019
Motivation: Prediction of the interaction affinity between proteins and compounds is a major challenge in the drug discovery process. WideDTA is a deep-learning based prediction model that employs chemical and biological textual sequence information to predict binding affinity.
Hakime Öztürk   +2 more
openaire   +2 more sources

GraphDTA: Predicting drug–target binding affinity with graph neural networks [PDF]

open access: yesBioinformatics, 2019
Abstract The development of new drugs is costly, time consuming, and often accompanied with safety issues. Drug repurposing can avoid the expensive and lengthy process of drug development by finding new uses for already approved drugs.
Thin Nguyen   +5 more
openaire   +2 more sources

Prediction of drug–target binding affinity using similarity-based convolutional neural network

open access: yesScientific Reports, 2021
Identifying novel drug–target interactions (DTIs) plays an important role in drug discovery. Most of the computational methods developed for predicting DTIs use binary classification, whose goal is to determine whether or not a drug–target (DT) pair ...
Jooyong Shim   +3 more
doaj   +1 more source

Drug-target affinity prediction using applicability domain based on data density

open access: yes, 2022
In the pursuit of research and development of drug discovery, the computational prediction of the target affinity of a drug candidate is useful for screening compounds at an early stage and for verifying the binding potential to an unknown target.
杉田, 駿也   +3 more
core   +1 more source

CSatDTA: Prediction of Drug–Target Binding Affinity Using Convolution Model with Self-Attention

open access: yes, 2022
Drug discovery, which aids to identify potential novel treatments, entails a broad range of fields of science, including chemistry, pharmacology, and biology. In the early stages of drug development, predicting drug–target affinity is crucial.
Chong, Kil To   +7 more
core   +1 more source

CSConv2d: A 2-D Structural Convolution Neural Network with a Channel and Spatial Attention Mechanism for Protein-Ligand Binding Affinity Prediction

open access: yesBiomolecules, 2021
The binding affinity of small molecules to receptor proteins is essential to drug discovery and drug repositioning. Chemical methods are often time-consuming and costly, and models for calculating the binding affinity are imperative.
Xun Wang   +4 more
doaj   +1 more source

Comparison Study of Computational Prediction Tools for Drug-Target Binding Affinities [PDF]

open access: yesFrontiers in Chemistry, 2019
The drug development is generally arduous, costly, and success rates are low. Thus, the identification of drug-target interactions (DTIs) has become a crucial step in early stages of drug discovery. Consequently, developing computational approaches capable of identifying potential DTIs with minimum error rate are increasingly being pursued.
Maha Thafar   +6 more
openaire   +4 more sources

Drug target binding affinity prediction considering the interaction of molecule atom and protein subsequences

open access: yes, 2021
The identification of drug target interactions is an important task in drug discovery. To model the interaction of drug and protein, most of the computational methods of drug target affinity prediction have been proposed the global interaction between ...
Haelee Bae
core   +1 more source

Structural insights and therapeutic targets in Acinetobacter baumannii capsule biosynthesis

open access: yesFEBS Letters, EarlyView.
Hypervirulent KL49 A. baumannii's capsular polysaccharide contains the nonulosonic acid 8‐epi‐Leg5,7Ac2, synthesized by epimerization via ElaA, ElaB, and ElaC. Crystal structures of ElaA, ElaB, and ElaC reveal their role in CMP‐Leg5,7Ac2 synthesis and regioselective C8 epimerization.
Woo Cheol Lee   +7 more
wiley   +1 more source

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