Results 221 to 230 of about 209,245 (257)

Evolutionary characterization of antiviral SAMD9/9L across kingdoms supports ancient convergence and lineage-specific adaptations. [PDF]

Nat Ecol Evol
Legrand A, Demeure R, Chantharath A, Rey C, Baltenneck J, Gilchrist CLM, Rocha JL, Loyer C, Picard L, Cimarelli A, Steinegger M, Rousset F, Sudmant PH, Etienne L.   +13 more
europepmc   +1 more source

Serial innovations by Asgard archaea shaped the DNA replication machinery of the early eukaryotic ancestor. [PDF]

Nat Ecol Evol
Feng Y, Ding J, Lin Y, Cui D, Li K, Zheng D, Cai Z, Bell SD, Wu F.   +8 more
europepmc   +1 more source

The evolutionary lifecycle of ribosome hibernation factors

Melnikov S, Chan L, Omae K, Brown C, Amikura K, Ekemezie C, Clark J, Nishide K, Helena-Bueno K, Palmowski P, Porter A, Suzuki S.   +11 more
europepmc   +1 more source

Reconciliation Reconsidered: In Search of a Most Representative Reconciliation in the Duplication-Transfer-Loss Model

IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2021
Maximum parsimony reconciliation is a fundamental technique for studying the evolutionary histories of pairs of entities such as genes and species, parasites and hosts, and species and their biogeographical habitats. In these contexts, reconciliation is generally performed using the duplication-transfer-loss (DTL) model in a maximum parsimony framework.
Melissa Grueter, Kalani Duran, Ramya Ramalingam, Ran Libeskind-Hadas   +3 more
semanticscholar   +4 more sources

Computing the Diameter of the Space of Maximum Parsimony Reconciliations in the Duplication-Transfer-Loss Model

IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2019
Phylogenetic tree reconciliation is widely used in the fields of molecular evolution, cophylogenetics, parasitology, and biogeography to study the evolutionary histories of pairs of entities. In these contexts, reconciliation is often performed using maximum parsimony under the Duplication-Transfer-Loss (DTL) event model.
Jordan Haack, Eli Zupke, Natalie Ramirez, Yi-Chieh Wu, Ran Libeskind-Hadas   +4 more
semanticscholar   +5 more sources

Clustering the Space of Maximum Parsimony Reconciliations in the Duplication-Transfer-Loss Model

International Conference on Algorithms for Computational Biology, 2017
Phylogenetic tree reconciliation is widely used in the fields of molecular evolution, cophylogenetics, parasitology, and biogeography for studying the evolutionary histories of pairs of entities. Reconciliation is often performed using maximum parsimony under the DTL (Duplication-Transfer-Loss) event model.
Alex Ozdemir, Michael Sheely, Daniel Bork, Ricson Cheng, Reyna Hulett, Jean Sung, Jincheng Wang, Ran Libeskind-Hadas   +7 more
semanticscholar   +3 more sources

Inferring Evolutionary Scenarios in the Duplication, Loss and Horizontal Gene Transfer Model

Logic and Program Semantics, 2012
Paweł Górecki, Jerzy Tiuryn
openalex   +2 more sources

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Genome Distance and Phylogenetic Inference Accommodating Gene Duplication, Loss and New Gene Input.

Molecular Phylogenetics and Evolution, 2023
With the rapid growth of entire genome data, phylogenomics focuses on analyzing evolutionary histories and relationships of species, i.e., the tree of life.
X. Gu
semanticscholar   +1 more source

Deciphering Microbial Gene Family Evolution Using Duplication-Transfer-Loss Reconciliation and RANGER-DTL.

Methods in molecular biology, 2022
M. Bansal
semanticscholar   +1 more source