Results 31 to 40 of about 209,245 (257)

Evolution at the Subgene Level: Domain Rearrangements in the Drosophila Phylogeny [PDF]

open access: yes, 2011
Supplementary sections 1–13, tables S1–S10, and figures S1–S9 are available at Molecular Biology and Evolution online (http://www.mbe.oxfordjournals.org/).Although the possibility of gene evolution by domain rearrangements has long been appreciated ...
Kellis, Manolis   +2 more
core   +2 more sources

Most parsimonious reconciliation in the presence of gene duplication, loss, and deep coalescence using labeled coalescent trees

open access: yesGenome Research, 2014
Accurate gene tree-species tree reconciliation is fundamental to inferring the evolutionary history of a gene family. However, although it has long been appreciated that population-related effects such as incomplete lineage sorting (ILS) can dramatically
Yi-Chieh Wu   +3 more
semanticscholar   +1 more source

The Multilocus Multispecies Coalescent: A Flexible New Model of Gene Family Evolution

open access: yesbioRxiv, 2020
Incomplete lineage sorting (ILS), the interaction between coalescence and speciation, can generate incongruence between gene trees and species trees, as can gene duplication (D), transfer (T) and loss (L).
Qiuyi Li   +3 more
semanticscholar   +1 more source

THE TRANSPORT LAYER OF THE ISO/OSI MODEL IN COM­PUTER NETWORKS

open access: yesTHE INTERNATIONAL SCIENTIFIC-PRACTICAL JOURNAL "COMMODITIES AND MARKETS", 2021
Background. The transport layer is designed to deliver data without errors, losses and duplication in the order in which they were transmitted. It provides data transfer between two applications with the required level of reliability.
Kostiuk Yuliia, Shestak Yaroslav
semanticscholar   +1 more source

Genomic variations associated with attenuation in Mycobacterium avium subsp paratuberculosis vaccine strains [PDF]

open access: yes, 2013
BACKGROUND: Mycobacterium avium subspecies paratuberculosis (MAP) whole cell vaccines have been widely used tools in the control of Johne's disease in animals despite being unable to provide complete protection. Current vaccine strains derive from stocks
Bull, TJ   +7 more
core   +1 more source

Unifying Parsimonious Tree Reconciliation

open access: yes, 2013
Evolution is a process that is influenced by various environmental factors, e.g. the interactions between different species, genes, and biogeographical properties.
A.C. Berglund-Sonnhammer   +28 more
core   +1 more source

Additional file 1 of GATC: a genetic algorithm for gene tree construction under the Duplication-Transfer-Loss model of evolution

open access: yes, 2018
Contains supplementary information on the effect of operator rates (Figure S1) and errors in the species tree (Figure S2) on reconstruction accuracy. It also contains the original reference tree of the Poyeye family (Figure S3) and the four alternative trees obtained by GATC (Figure S4-S7). (PDF 315 kb)
Noutahi, Emmanuel, El-Mabrouk, Nadia
openaire   +1 more source

Are there laws of genome evolution? [PDF]

open access: yes, 2011
Research in quantitative evolutionary genomics and systems biology led to the discovery of several universal regularities connecting genomic and molecular phenomic variables.
Koonin, Eugene V.
core   +4 more sources

Parameter Estimation and Species Tree Rooting Using ALE and GeneRax

open access: yesGenome Biology and Evolution, 2023
ALE and GeneRax are tools for probabilistic gene tree–species tree reconciliation. Based on a common underlying statistical model of how gene trees evolve along species trees, these methods rely on gene vs.
T. Williams   +7 more
semanticscholar   +1 more source

Crosstalk between the ribosome quality control‐associated E3 ubiquitin ligases LTN1 and RNF10

open access: yesFEBS Letters, EarlyView.
Loss of the E3 ligase LTN1, the ubiquitin‐like modifier UFM1, or the deubiquitinating enzyme UFSP2 disrupts endoplasmic reticulum–ribosome quality control (ER‐RQC), a pathway that removes stalled ribosomes and faulty proteins. This disruption may trigger a compensatory response to ER‐RQC defects, including increased expression of the E3 ligase RNF10 ...
Yuxi Huang   +8 more
wiley   +1 more source

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