Cache-efficient and vectorized parallel dynamic programming for RNA folding. [PDF]
PLoS OneGruzewski M, Palkowski M.
europepmc +1 more source
CausNet: generational orderings based search for optimal Bayesian networks via dynamic programming with parent set constraints. [PDF]
BMC Bioinformatics, 2023 Sharma N, Millstein J.
europepmc +1 more source
FEBS Open Bio, EarlyView.The dFoCC pipeline starts with observed DED and resting‐state coordinates, which are then used to generate a library of triggered states. Correlation analysis of the calculated DED features of each candidate vs observed DED permits quantitative evaluation of candidate structural quality.
Meng Iao Fong +3 more
wiley +1 more source
SMILES alignment: a dynamic programming approach for the alignment of metabolites and other small organic molecules. [PDF]
BMC BioinformaticsTang AL, Liberles DA.
europepmc +1 more source
On the Theory of Dynamic Programming [PDF]
Proceedings of the National Academy of Sciences, 1952 openaire +3 more sources
Acute caffeine treatment protects the developing retina from ischemia‐induced cell death
FEBS Open Bio, EarlyView.Caffeine reduces cell death in the developing retina under ischemia (OGD). This effect does not involve BDNF upregulation or antioxidant pathways (NRF2/VEGF). Neuroprotection occurs mainly through adenosine A2A receptor antagonism, decreasing glutamate release and excitotoxicity, highlighting caffeine's potential as an acute neuroprotective agent in ...
Amanda Alves Nascimento +6 more
wiley +1 more source
Evaluating the significance of embedding-based protein sequence alignment with clustering and double dynamic programming for remote homology. [PDF]
Sci RepSpicer R +5 more
europepmc +1 more source
SCYN: single cell CNV profiling method using dynamic programming. [PDF]
BMC Genomics, 2021 Feng X +5 more
europepmc +1 more source
FEBS Open Bio, EarlyView.Pharmacological inhibition of PERK in a DEN‐induced mouse model of liver cancer does not reduce tumor burden but alters cellular stress signaling. Despite blocking PERK activity, downstream stress responses, including CHOP expression, remain active, suggesting compensatory mechanisms within the unfolded protein response that may influence tumor ...
Ada Lerma‐Clavero +5 more
wiley +1 more source
Fast and Memory-Efficient Dynamic Programming Approach for Large-Scale EHH-Based Selection Scans. [PDF]
Mol Biol EvolRahman A, Smith TQ, Szpiech ZA.
europepmc +1 more source