Results 51 to 60 of about 213,086 (270)

Cell wall target fragment discovery using a low‐cost, minimal fragment library

open access: yesFEBS Letters, EarlyView.
LoCoFrag100 is a fragment library made up of 100 different compounds. Similarity between the fragments is minimized and 10 different fragments are mixed into a single cocktail, which is soaked to protein crystals. These crystals are analysed by X‐ray crystallography, revealing the binding modes of the bound fragment ligands.
Kaizhou Yan   +5 more
wiley   +1 more source

Complementary edge ideals

open access: yes
Let $S=K[x_1,\dots,x_n]$ be the polynomial ring over a field $K$ and $I\subset S$ be a squarefree monomial ideal generated in degree $n-2$. Motivated by the remarkable behavior of the powers of $I$ when $I$ admits a linear resolution, as established in [11], in this work we investigate the algebraic and homological properties of $I$ and its powers.
Ficarra, Antonino, Moradi, Somayeh
openaire   +4 more sources

The (Glg)ABCs of cyanobacteria: modelling of glycogen synthesis and functional divergence of glycogen synthases in Synechocystis sp. PCC 6803

open access: yesFEBS Letters, EarlyView.
We reconstituted Synechocystis glycogen synthesis in vitro from purified enzymes and showed that two GlgA isoenzymes produce glycogen with different architectures: GlgA1 yields denser, highly branched glycogen, whereas GlgA2 synthesizes longer, less‐branched chains.
Kenric Lee   +3 more
wiley   +1 more source

Regularity of Edge Ideals and Their Powers

open access: yes, 2018
We survey recent studies on the Castelnuovo-Mumford regularity of edge ideals of graphs and their powers. Our focus is on bounds and exact values of $\text{ reg } I(G)$ and the asymptotic linear function $\text{ reg } I(G)^q$, for $q \geq 1,$ in terms of
A Alilooee   +39 more
core   +1 more source

Regularity and $h$-Polynomials of Edge Ideals [PDF]

open access: yesThe Electronic Journal of Combinatorics, 2019
For any two integers $d,r \geqslant 1$, we show that there exists an edge ideal $I(G)$ such that ${\rm reg}\left(R/I(G)\right)$, the Castelnuovo-Mumford regularity of $R/I(G)$, is $r$, and $\deg h_{R/I(G)}(t)$, the degree of the $h$-polynomial of $R/I(G)$, is $d$.
Takayuki Hibi   +2 more
openaire   +3 more sources

Structural biology of ferritin nanocages

open access: yesFEBS Letters, EarlyView.
Ferritin is a conserved iron‐storage protein that sequesters iron as a ferric mineral core within a nanocage, protecting cells from oxidative damage and maintaining iron homeostasis. This review discusses ferritin biology, structure, and function, and highlights recent cryo‐EM studies revealing mechanisms of ferritinophagy, cellular iron uptake, and ...
Eloise Mastrangelo, Flavio Di Pisa
wiley   +1 more source

Toric Rings and Ideals of Stable Set Polytopes

open access: yesMathematics, 2019
In the present paper, we study the normality of the toric rings of stable set polytopes, generators of toric ideals of stable set polytopes, and their Gröbner bases via the notion of edge polytopes of finite nonsimple graphs and the results on their
Kazunori Matsuda   +2 more
doaj   +1 more source

Construction of Cohen–Macaulay Binomial Edge Ideals [PDF]

open access: yesCommunications in Algebra, 2013
We discuss algebraic and homological properties of binomial edge ideals associated to graphs which are obtained by gluing of subgraphs and the formation of cones.
Rauf A., RINALDO, GIANCARLO
openaire   +3 more sources

Tau acetylation at K331 has limited impact on tau pathology in vivo

open access: yesFEBS Letters, EarlyView.
We mapped tau post‐translational modifications in humanized MAPT knock‐in mice and in amyloid‐bearing double knock‐in mice. Acetylation within the repeat domain, particularly around K331, showed modest increases under amyloid pathology. To test functional relevance, we generated MAPTK331Q knock‐in mice.
Shoko Hashimoto   +3 more
wiley   +1 more source

Gotzmann Edge Ideals

open access: yesCommunications in Algebra, 2012
Let P = k[x_1, ..., x_n] be the polynomial ring in n variables. A homogeneous ideal I of P generated in degree d is called Gotzmann if it has the smallest possible Hilbert function out of all homogeneous ideals with the same dimension in degree d. The edge ideal of a simple graph G on vertices x_1, ..., x_n is the quadratic square-free monomial ideal ...
openaire   +2 more sources

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