Results 21 to 30 of about 1,994,298 (265)

g:Profiler: a web server for functional enrichment analysis and conversions of gene lists (2019 update)

open access: yesNucleic Acids Res., 2019
Biological data analysis often deals with lists of genes arising from various studies. The g:Profiler toolset is widely used for finding biological categories enriched in gene lists, conversions between gene identifiers and mappings to their orthologs ...
Uku Raudvere   +6 more
semanticscholar   +1 more source

Enrichr-KG: bridging enrichment analysis across multiple libraries

open access: yesNucleic Acids Res., 2023
Gene and protein set enrichment analysis is a critical step in the analysis of data collected from omics experiments. Enrichr is a popular gene set enrichment analysis web-server search engine that contains hundreds of thousands of annotated gene sets ...
J. E. Evangelista   +5 more
semanticscholar   +1 more source

Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists

open access: yesNucleic Acids Research, 2008
Functional analysis of large gene lists, derived in most cases from emerging high-throughput genomic, proteomic and bioinformatics scanning approaches, is still a challenging and daunting task.
Danzhi Huang   +2 more
semanticscholar   +1 more source

Enrichr: interactive and collaborative HTML5 gene list enrichment analysis tool

open access: yesBMC Bioinformatics, 2013
System-wide profiling of genes and proteins in mammalian cells produce lists of differentially expressed genes/proteins that need to be further analyzed for their collective functions in order to extract new knowledge.
Edward Y. Chen   +7 more
semanticscholar   +1 more source

Keeping Environmental Enrichment Enriching

open access: yesInternational Journal of Comparative Psychology, 2002
The use of novel objects as environmental enrichment devices is a key aspect of many environmental enrichment programs, regardless of whether the animals being enriched are housed in aquaria, zoos, or laboratories. The effectiveness of novel objects as enrichment devices depends on a number of factors, many of which are based on findings from ...
Kuczaj, Stan   +5 more
openaire   +3 more sources

PANTHER version 14: more genomes, a new PANTHER GO-slim and improvements in enrichment analysis tools

open access: yesNucleic Acids Res., 2018
PANTHER (Protein Analysis Through Evolutionary Relationships, http://pantherdb.org) is a resource for the evolutionary and functional classification of genes from organisms across the tree of life.
H. Mi   +4 more
semanticscholar   +1 more source

From the Cover: Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles

open access: yes, 2005
Although genomewide RNA expression analysis has become a routine tool in biomedical research, extracting biological insight from such information remains a major challenge.
A. Subramanian   +10 more
semanticscholar   +1 more source

Enriched order polytopes and enriched Hibi rings [PDF]

open access: yesEuropean Journal of Mathematics, 2020
AbstractStanley introduced two classes of lattice polytopes associated to posets, which are called the order polytope $${{\mathscr {O}}}_P$$ O P and the chain polytope $${{\mathscr {C}}}_P$$ C P
Hidefumi Ohsugi, Akiyoshi Tsuchiya
openaire   +2 more sources

gprofiler2 -- an R package for gene list functional enrichment analysis and namespace conversion toolset g:Profiler

open access: yesF1000Research, 2020
g:Profiler ( https://biit.cs.ut.ee/gprofiler) is a widely used gene list functional profiling and namespace conversion toolset that has been contributing to reproducible biological data analysis already since 2007.
Liis Kolberg   +4 more
semanticscholar   +1 more source

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