Results 31 to 40 of about 694,735 (255)

Highly diverse nirK genes comprise two major clades that harbour ammonium-producing denitrifiers [PDF]

, 2016
Background: Copper dependent nitrite reductase, NirK, catalyses the key step in denitrification, i.e. nitrite reduction to nitric oxide. Distinct structural NirK classes and phylogenetic clades of NirK-type denitrifiers have previously been observed ...
Decleyre, Helen, Heylen, Kim, Tytgat, Bjorn, Willems, Anne   +3 more
core   +3 more sources

Sulfur Metabolites Play Key System-Level Roles in Modulating Denitrification

mSystems, 2021
Competition between nitrate-reducing bacteria (NRB) and sulfate-reducing bacteria (SRB) for resources in anoxic environments is generally thought to be governed largely by thermodynamics.
Anne E. Otwell, Alex V. Carr, Erica L. W. Majumder, Maryann K. Ruiz, Regina L. Wilpiszeski, Linh T. Hoang, Bill Webb, Serdar Turkarslan, Sean M. Gibbons, Dwayne A. Elias, David A. Stahl, Gary Siuzdak, Nitin S. Baliga   +12 more
doaj   +1 more source

Modelling the emergent dynamics and major metabolites of the human colonic microbiota [PDF]

, 2015
Funded by Scottish Government's Rural and Environment Science and Analytical Services Division (RESAS) Acknowledgements We would like to thank Thanasis Vogogias, David Nutter and Alec Mann for their assistance in developing the software for this model ...
Aminov, Bagramyan, Barcenilla, Bratbak, Cotillard, David, Drake, Duncan, Duncan, Duncan, Duncan, Duncan, Duncan, Eckburg, Egert, Feijó Delgado, Filippo, Flint, Flint, Flint, Gottschalk, Kettle, Kovarova-Kovar, Latham, Liu, Lopez-Siles, Louis, Louis, Macfarlane, Marquet, Moore, Munoz-Tamayo, Nava, Norberg, Prins, Qin, Ragsdale, Reichardt, Richardson, Robert, Rogers, Russell, Salyers, Seeliger, Stephen, Swidsinski, Tap, Turnbaugh, Walker, Walker, Walker, Whitman, Wolin, Wu, Yachi, Ze   +55 more
core   +1 more source

Application of quasimetagenomics methods to define microbial diversity and subtype Listeria monocytogenes in dairy and seafood production facilities

Microbiology Spectrum, 2023
Microorganisms frequently colonize surfaces within food production facilities. Detection of Listeria monocytogenes in this setting relies on culture-dependent methods, but the complex dynamics of bacterial interactions within these environments and their
Brandon Kocurek, Padmini Ramachandran, Christopher J. Grim, Paul Morin, Laura Howard, Andrea Ottesen, Ruth Timme, Susan R. Leonard, Hugh Rand, Errol Strain, Daniel Tadesse, James B. Pettengill, David W. Lacher, Mark Mammel, Karen G. Jarvis   +14 more
doaj   +1 more source

It Takes a Village: Microbial Communities Thrive through Interactions and Metabolic Handoffs

mSystems, 2018
An enduring theme in microbial ecology is the interdependence of microbial community members. Interactions between community members include provision of cofactors, establishment of redox gradients, and turnover of key nutrients to drive biogeochemical ...
Laura A. Hug, Rebecca Co
doaj   +1 more source

Multidrug-Resistant Salmonella Species and Their Mobile Genetic Elements from Poultry Farm Environments in Malaysia

Antibiotics, 2023
The prevalence and persistent outbreaks of multidrug-resistant (MDR) Salmonella in low-income countries have received growing attention among the public and scientific community.
Syahidiah Syed Abu Thahir, Sakshaleni Rajendiran, Rafiza Shaharudin, Yuvaneswary Veloo   +3 more
doaj   +1 more source

Assessment of the influence of intrinsic environmental and geographical factors on the bacterial ecology of pit latrines [PDF]

, 2016
Funding Information: This research received financial support from the Bill and Melinda Gates Foundation (grant number OPP52641). AWW and JP were supported by the Wellcome Trust [grant number 098051]. AWW and the Rowett Institute of Nutrition and Health,
Abdelahi, Faraji, Ensink, Jeroen H. J., Gibson, Walter, Gundogdu, Ozan, Ijaz, Umer Zeeshan, Nguyen, Viet-Anh, Parkhill, Julian, Quince, Christopher, Sudgen, Steven, Torondel, Belen, Walker, Alan W.   +10 more
core   +4 more sources

Bacterial Lipopolysaccharide Destabilizes Influenza Viruses

mSphere, 2017
Depending on the specific viral pathogen, commensal bacteria can promote or reduce the severity of viral infection and disease progression in their hosts.
Christopher Bandoro, Jonathan A. Runstadler   +1 more
doaj   +1 more source

Mycobacterial cell division arrest and smooth‐to‐rough envelope transition using CRISPRi‐mediated genetic repression systems

FEBS Open Bio, EarlyView.
CRISPRI‐mediated gene silencing and phenotypic exploration in nontuberculous mycobacteria. In this Research Protocol, we describe approaches to control, monitor, and quantitatively assess CRISPRI‐mediated gene silencing in M. smegmatis and M. abscessus model organisms.
Vanessa Point, Wafaa Achache, Janïs Laudouze, Eliana Sepulveda Ramos, Mickaël Maziero, Céline Crauste, Stéphane Canaan, Pierre Santucci   +7 more
wiley   +1 more source

Phyllosphere microbiology with special reference to diversity and plant genotype [PDF]

, 2008
The phyllosphere represents the habitat provided by the aboveground parts of plants, and on a global scale supports a large and complex microbial community.
Adams, Andrews, Arnold, Arnold, Asins, Beattie, Beattie, Becker, Bernstein, Blakeman, Brandl, Brandl, Bunster, Corpe, Correa, Davis, de Jager, Diem, Dik, Dingman, Elvira-Recuenco, Fourtouni, Freiberg, Gal, Glickmann, Glushakova, Gourion, Greenberg, Hirano, Hirano, Hirano, Hirano, Hutchison, Idris, Inacio, Ishimaru, Jackson, Jacques, Jacques, Kadivar, Kinkel, Kinkel, Kinkel, Kinkel, Klerks, Lacey, Lamb, Lambais, Larran, Last, Leben, Legard, Leveau, Lighthart, Lindemann, Lindemann, Lindow, Lindow, Manceau, Mansvelt, Manulis, Mariano, Mechaber, Mew, Mew, Miller, Miyamoto, Monier, Morris, Morris, Morris, Morris, Morris, Morris, Murty, Oliveira, O’Brien, O’Callaghan, Papen, Pillay, Preston, Quigley, Ramette, Rasche, Rasche, Rasche, Reiter, Romantschuck, Schreiber, Schweitzer, Sessitsch, Sessitsch, Shepherd, Singh, Stapleton, Sundin, Sundin, Surico, Suslow, Swift, ten Hoopen, Thompson, Upper, Van Aken, Venette, Wagner, Whipps, Wildman, Wilson, Wulff, Yang, Zak   +111 more
core   +1 more source