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Genomic SSR markers elucidate genetic architecture and phenotypic trait associations in Rhododendron Linnaeus. [PDF]

J Genet Eng Biotechnol
Shen J, Ye Y, Zhou Y, Rong X.
europepmc   +1 more source

EST-SSRs as a resource for population genetic analyses [PDF]

Heredity, 2007
Simple-sequence repeats (SSRs) have increasingly become the marker of choice for population genetic analyses. Unfortunately, the development of traditional 'anonymous' SSRs from genomic DNA is costly and time-consuming. These problems are further compounded by a paucity of resources in taxa that lack clear economic importance.

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New analysis of EST-SSR distribution and development of EST-SSR markers in Salvia miltiorrhiza

China Journal of Chinese Materia Medica, 2011
OBJECTIVE To establish the new EST-SSR markers for analyzing the genetic variation of different population of Salvia miltiorrhiza. METHOD It was dealt with ESTs newly downloaded from Genbank and that of acquired from HMPL lab EGassembler software, and then carried out SSR loci search and SSR type analysis by SSRIT software.
Xueyong, Wang, Xiaoli, Zhou, Wei, Gao, Guanghong, Cui, Luqi, Huang, Chunsheng, Liu   +5 more
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Transferability of cereal EST-SSR markers to ryegrass

Genome, 2009
A large number of expressed sequence tags (ESTs) in public databases have provided an opportunity for the systematic development of simple sequence repeat (SSR) markers. EST-SSRs derived from conserved coding sequences show considerable cross-species transferability in related species.
Sung-Chur, Sim, Ju-Kyung, Yu, Young-ki, Jo, Mark E, Sorrells, Geunhwa, Jung   +4 more
openaire   +2 more sources

Analysis and transferability of EST-SSR markers in grapes

Acta Horticulturae, 2009
Recent increase in the availability of expressed sequence tag (EST) data has facilitated the development of microsatellite markers in a number of plant species, including grapevine. We identified 23 ESTs containing perfect simple sequence repeats (EST-SSR) of di-, tri-, tetra-, and penta-nucleotide type from 506 expressed sequence tags (EST ...
Akkak A, Lembo A, Torello Marinoni D, Gribaudo I, Botta, R   +5 more
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Broussonetia monoica EST-SSR

2023
Development and application of molecular markers for EST ...
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Development of ESTs and data mining of pineapple EST-SSRs

Molecular Biology Reports, 2011
Improving the quality of the non-climacteric fruit, pineapple, is possible with information on the expression of genes that occur during the process of fruit ripening. This can be made known though the generation of partial mRNA transcript sequences known as expressed sequence tags (ESTs).
W D, Ong, C L Y, Voo, S V, Kumar
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EST-SSR markers for gerbera (Gerbera hybrida)

Molecular Breeding, 2010
Gerbera (Gerbera hybrida) is one of the most important cut and pot flowers marketed worldwide. Few molecular markers and no SSR (simple sequence repeat) markers were available for gerbera breeding and genetic studies. Through in silico analysis of 8,670 unigene sequences assembled from 16,998 gerbera expressed sequence tags (ESTs) in the GenBank, we ...
Li Gong, Zhanao Deng
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Genetic variation patterns of American chestnut populations at EST-SSRs

Botany, 2017
The objective of this study is to analyze patterns of genetic variation at genic expressed sequence tag – simple sequence repeats (EST-SSRs) and at chloroplast DNA markers in populations of American chestnut (Castanea dentata Borkh.) to assist in conservation and breeding efforts. Allelic diversity at EST-SSRs decreased significantly from southwest to
Oliver Gailing, Dana Nelson
exaly   +3 more sources