Results 101 to 110 of about 54,854 (216)

Soil metagenome datasets underneath the Arecibo Observatory reflector dish

Data in Brief, 2019
The Arecibo Observatory (AO) located in Arecibo, Puerto Rico, is the most sensitive, powerful and active planetary radar system in the world [1]. One of its principal components is the 305 m-diameter spherical reflector dish (AORD), which is exposed to ...
Miguel G. Rodriguez-Reyes, Carlos Rios-Velazquez   +1 more
doaj   +1 more source

Integrated Metagenomic and Metatranscriptomic Analyses of Microbial Communities in the Meso- and Bathypelagic Realm of North Pacific Ocean

Marine Drugs, 2013
Although emerging evidence indicates that deep-sea water contains an untapped reservoir of high metabolic and genetic diversity, this realm has not been studied well compared with surface sea water.
Deirdre R. Meldrum, Weimin Gao, Weiwen Zhang, Roger H. Johnson, Jieying Wu   +4 more
doaj   +1 more source

Size Matters: Assessing Optimum Soil Sample Size for Fungal and Bacterial Community Structure Analyses Using High Throughput Sequencing of rRNA Gene Amplicons

Frontiers in Microbiology, 2016
We examined the effect of different soil sample sizes obtained from an agricultural field, under a single cropping system uniform in soil properties and aboveground crop responses, on bacterial and fungal community structure and microbial diversity ...
Christopher Ryan Penton, V.S.R Gupta Vadakattu, Julian eYu, James M. Tiedje   +3 more
doaj   +1 more source

SICLE: A high-throughput tool for extracting evolutionary relationships from phylogenetic trees

, 2016
We present the phylogeny analysis software SICLE (Sister Clade Extractor), an easy-to-use, high- throughput tool to describe the nearest neighbors to a node of interest in a phylogenetic tree as well as the support value for the relationship.
DeBlasio, Dan, Wiscaver, Jennifer
core   +2 more sources

Genome guided, organ-specific transcriptome assembly of the European flounder (P. flesus) from the Baltic Sea

Scientific Data
Although the European flounder is frequently used in research and has economic importance, there is still lack of comprehensive transcriptome data for this species. In the present research we show RNA-Seq data from ten selected organs of P. flesus female
Konrad Pomianowski, Ewa Kulczykowska, Artur Burzyński   +2 more
doaj   +1 more source

Motifs tree: a new method for predicting post-translational modifications [PDF]

, 2017
Motivation: Post-translational modifications (PTMs) are important steps in the maturation of proteins. Several models exist to predict specific PTMs, from manually detected patterns to machine learning methods.
Charpilloz, Christophe, Chopard, Bastien, Falcone, Jean-Luc, Veuthey, Anne-Lise   +3 more
core  

Comparative microbial metagenomic analysis of drinking water plants and wastewater treatment plants in Istanbul

Frontiers in Microbiology
IntroductionWastewater treatment plants (WWTPs) and drinking-water treatment plants (DWTPs) are critical for public health due to the potential risks posed by microorganisms that may persist after treatment.
Mehmet Demirci, Cankut Çubuk, Ferhat Dasdemir, Abdulkerim Suat Saribas, Esra Billur Balcıoglu, Dogukan Ozbey, Dogu Yorulmaz, Tugba Olmez Hanci, Safak Basa, Bekir Sami Kocazeybek, Bekir Sami Kocazeybek   +10 more
doaj   +1 more source

Comparative Proteomic Characterization of Protein Disorder distribution across Eukaryota

, 2012
An analysis of the complexity of proteomes using SLiMPred, a method to detect short linear motifs in protein sequences.
Mooney, Catherine, Holton Denis Shields, Therese   +1 more
openaire   +1 more source

Evolution of the Oligopeptide Transporter Family [PDF]

, 2011
Kenny M. Gomolplitinant, Milton H. Saier
core   +1 more source

Microbial diversity and functional gene profiling of cold-adaptive soil-microbiomes from Tullu-Dimtu Mountain, Ethiopia

Annals of Microbiology
Background Tullu-Dimtu Mountain, located in the Bale Mountains of the Oromia National Regional State in South-Eastern Ethiopia, is one of the country’s highest and coldest environments.
Alena Berhie Gebremedhin, Ebrahim Mama Abda, Gizachew Haile Gidamo, Olubukola Oluranti Babalola, Mesfin Tafesse Gemeda   +4 more
doaj   +1 more source