Results 11 to 20 of about 373,383 (299)

The fecal metabolome as a functional readout of the gut microbiome [PDF]

Nature Genetics, 2018
The human gut microbiome plays a key role in human health 1 , but 16S characterization lacks quantitative functional annotation 2 . The fecal metabolome provides a functional readout of microbial activity and can be used as an intermediate phenotype mediating host-microbiome interactions 3 .
Zierer, J, Jackson, M, Kastenmüller, G, Mangino, M, Long, T, Telenti, A, Mohney, R, Small, K, Bell, J, Steves, C, Valdes, A, Spector, T, Menni, C   +12 more
openaire   +7 more sources

Dysbiotic Fecal Microbiome in HIV-1 Infected Individuals in Ghana [PDF]

Frontiers in Cellular and Infection Microbiology, 2021
HIV-1 infected individuals under antiretroviral therapy can control viremia but often develop non-AIDS diseases such as cardiovascular and metabolic disorders.
Prince Kofi Parbie, Prince Kofi Parbie, Prince Kofi Parbie, Taketoshi Mizutani, Aya Ishizaka, Ai Kawana-Tachikawa, Ai Kawana-Tachikawa, Ai Kawana-Tachikawa, Lucky Ronald Runtuwene, Sayuri Seki, Christopher Zaab-Yen Abana, Dennis Kushitor, Evelyn Yayra Bonney, Sampson Badu Ofori, Satoshi Uematsu, Satoshi Uematsu, Satoshi Uematsu, Seiya Imoto, Seiya Imoto, Yasumasa Kimura, Hiroshi Kiyono, Hiroshi Kiyono, Hiroshi Kiyono, Koichi Ishikawa, William Kwabena Ampofo, Tetsuro Matano, Tetsuro Matano, Tetsuro Matano   +27 more
doaj   +2 more sources

Dietary Habits and Atopic Dermatitis Significantly Influence the Fecal Microbiome. [PDF]

Allergy
Background Atopic dermatitis (AD) has been associated with microbial gut dysbiosis in children. Data in adults is scarce. Objective We sought to explore the
Fehr D, Flack N, Masenga G, Mosha N, Li N, White A, Semango G, Distler M, Lang C, Grimm F, Scharl M, Mavura D, Masenga JE, Schmid-Grendelmeier P, Brüggen MC.   +14 more
europepmc   +2 more sources

Effect of interferon on broilers' fecal microbiome composition [PDF]

Journal of Advanced Veterinary and Animal Research
<b>Objective:</b> The purpose of our study was to investigate the effect of chicken interferon on the intestinal microbiota of broiler chickens. <b>Materials and Methods:</b> The study used next-generation sequencing on the Ion Torrent pragmatic general multicast platform to target the V3 16S ribosomal ribonucleic acid ...
Inna Burakova, Yuliya Smirnova, Mariya Gryaznova, Polina Morozova, Vyacheslav Kotarev, Ludmila Lyadova, Nadezhda Ivanova, Larisa Denisenko, Mikhail Syromyatnikov   +8 more
openaire   +5 more sources

Improved Equine Fecal Microbiome Characterization Using Target Enrichment by Hybridization Capture

Animals
GITDs are among the most common causes of death in adult and young horses in the United States (US). Previous studies have indicated a connection between GITDs and the equine gut microbiome. However, the low taxonomic resolution of the current microbiome
Sonsiray Álvarez Narváez, Megan S. Beaudry, Connor G. Norris, Paula B. Bartlett, Travis C. Glenn, Susan Sanchez   +5 more
doaj   +2 more sources

Interactions between time on diet, antibiotic treatment, and liver abscess development on the fecal microbiome of beef cattle

Animal Microbiome
Background Liver abscesses caused by polymicrobial infections of the liver are a widespread problem in feedlot cattle production. There are currently no effective methods for the early detection of liver abscesses or to predict antibiotic efficacy for ...
Germán Plata, Nielson T. Baxter, Troy B. Hawkins, Lucas Huntimer, Akshitha Nagireddy, Dwi Susanti, James B. Reinbold   +6 more
doaj   +2 more sources

Fecal Microbiome in Epidemiologic Studies—Response [PDF]

Cancer Epidemiology, Biomarkers & Prevention, 2016
We thank Drew and colleagues ([1][1]) for their interest in our recent publication ([2][2]) and share in their enthusiasm for identifying “a straight forward self-collection procedure” for “multiple molecular analyses.” Fecal collection and sampling have continued to be a topic of study,
Rashmi, Sinha, Emily, Vogtmann, Jun, Chen, Amnon, Amir, Jianxin, Shi, Joshua, Sampson, Roberto, Flores, Rob, Knight, Nicholas, Chia   +8 more
openaire   +2 more sources

G2S: A New Deep Learning Tool for Predicting Stool Microbiome Structure From Oral Microbiome Data

Frontiers in Genetics, 2021
Deep learning methodologies have revolutionized prediction in many fields and show the potential to do the same in microbial metagenomics. However, deep learning is still unexplored in the field of microbiology, with only a few software designed to work ...
Simone Rampelli, Marco Fabbrini, Marco Fabbrini, Marco Candela, Elena Biagi, Patrizia Brigidi, Silvia Turroni   +6 more
doaj   +1 more source

Reconstruction and Dynamics of the Human Intestinal Microbiome Observed In Situ

Engineering, 2022
The human gut microbiome has primarily been studied through the use of fecal samples, a practice that has generated vital knowledge on the composition and functional capacities of gastrointestinal microbial communities.
Xiaolin Liu, Min Dai, Yue Ma, Na Zhao, Ziyu Wang, Ying Yu, Yakun Xu, Huijie Zhang, Liyuan Xiang, He Tian, Guanghou Shui, Faming Zhang, Jun Wang   +12 more
doaj   +1 more source

Fecal Microbiome in Epidemiologic Studies—Letter [PDF]

Cancer Epidemiology, Biomarkers & Prevention, 2016
We congratulate Sinha and colleagues on their recent report ([1][1]) comparing fecal sample collection methods for epidemiologic studies of the gut microbiome. These data contribute to the increasing body of literature describing robust methodologic frameworks for specimen collection and ...
Drew, David A., Lochhead, Paul, Abu-Ali, Galeb, Chan, Andrew T., Huttenhower, Curtis, Izard, Jacques   +5 more
openaire   +2 more sources