Results 21 to 30 of about 4,504,185 (191)
SPIRE, 2004 We show that, by combining an existing compression boosting technique with the wavelet tree data structure, we are able to design a variant of the FM-index which scales well with the size of the input alphabet Σ. The size of the new index built on a string T[1,n] is bounded by \(n H_{k}(T) + O\bigl((n \log\log n)/\log_{\vert {\Sigma}\vert } n\bigr ...
P. Ferragina +3 more
semanticscholar +3 more sources
Accelerating Sequence Alignments Based on FM-Index Using the Intel KNL Processor [PDF]
IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2020 FM-index is a compact data structure suitable for fast matches of short reads to large reference genomes. The matching algorithm using this index exhibits irregular memory access patterns that cause frequent cache misses, resulting in a memory bound problem.
Jose M. Herruzo +5 more
semanticscholar +6 more sources
FM latency, FM ratio, F-wave latency versus F-wave index in the diagnosis of diabetic neuropathy
The Egyptian Journal of Neurology, Psychiatry and Neurosurgery, 2023 Background Diabetes is one of the most common causes for peripheral neuropathy which warrants early diagnosis and treatment. The conventional nerve conduction studies appear to be normal if few of the nerve roots are escaping the lesion.
G. R. Sathya +2 more
doaj +1 more source
Forensic perspective of foramen magnum— A CBCT study
Journal of Indian Academy of Oral Medicine and Radiology, 2023 Background: The purpose of the study is to evaluate the CBCT scans of both adult males and females and measure Foramen Magnum through transverse and sagittal diameter for calculating FM Index, which acts as a tool for sexual dimorphism in unidentifiable ...
Ramya Kotha +5 more
doaj +1 more source
Современная ревматология, 2022 The prevalence of fibromyalgia (FM) in the general population is 2–8%, and among patients with rheumatic diseases it is 2–3 times higher. The presence of comorbid FM significantly affects the course of rheumatoid arthritis (RA).Objective: to assess the ...
N. A. Melikova +2 more
doaj +1 more source
Agriculture, 2022 The chlorophyll fluorescence parameter Fv/Fm (maximum photosynthetic efficiency of optical system II) is an intrinsic index for exploring plant photosynthesis.
Shuangya Wen +8 more
doaj +1 more source
Computation of the suffix array, Burrows-Wheeler transform and FM-index in V-order
Theoretical Computer Science, 2021 V-order is a total order on strings that determines an instance of Unique Maximal Factorization Families (UMFFs), a generalization of Lyndon words. The fundamental V-comparison of strings can be done in linear time and constant space.
J. Daykin, N. Mhaskar, W. F. Smyth
semanticscholar +1 more source
Compressing Similar Biological Sequences Using FM-Index
2014 Data Compression Conference, 2014 Nowadays, decreasing cost and better accessibility of sequencing methods have enabled studies of genetic variation between individuals of the same species and also between two related species. This has led to a rapid increase in biological data consisting of sequences that are very similar to each other, these sequences usually being stored together in
P. Procházka, J. Holub
semanticscholar +2 more sources
Journal of the American Heart Association: Cardiovascular and Cerebrovascular Disease, 2021 Background There is debate whether body mass index is a good predictor of health outcomes because different tissues, namely skeletal muscle mass (SMM) and fat mass (FM), may be differentially associated with risk.
Rebecca Knowles +5 more
doaj +1 more source
Journal of Indian Academy of Oral Medicine and Radiology, 2021 Background: In explosions, mass disasters, and warfare, human remains are got in fragmented states. Only strong bones that resist fracture can be used for personal identification in forensics. The foramen magnum (FM) dimension at the base of the skull is
Pradhuman Verma +5 more
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