Results 21 to 30 of about 120,987 (294)

Stepwise large genome assembly approach: a case of Siberian larch (Larix sibirica Ledeb)

BMC Bioinformatics, 2019
Background De novo assembling of large genomes, such as in conifers (~ 12–30 Gbp), which also consist of ~ 80% of repetitive DNA, is a very complex and computationally intense endeavor.
Dmitry A. Kuzmin, Sergey I. Feranchuk, Vadim V. Sharov, Alexander N. Cybin, Stepan V. Makolov, Yuliya A. Putintseva, Natalya V. Oreshkova, Konstantin V. Krutovsky   +7 more
doaj   +1 more source

Complete chloroplast sequence of Fenerivia ghesquiereana (Annonaceae): a rare and endemic tree from Madagascar

Mitochondrial DNA. Part B. Resources, 2021
Fenerivia ghesquiereana (Cavaco & Keraudren) R.M.K. Saunders (Annaonaceae) is a rare and endemic tree restricted to the warm tropical forests of Madagascar, a major global hotspot for biodiversity.
Yixi Wang, Tijana Cvetković, Amy N. A. Aritsara, Angelo D. A. Carrion, Joeri S. Strijk   +4 more
doaj   +1 more source

Prediction of microbial communities for urban metagenomics using neural network approach. [PDF]

, 2019
BACKGROUND:Microbes are greatly associated with human health and disease, especially in densely populated cities. It is essential to understand the microbial ecosystem in an urban environment for cities to monitor the transmission of infectious diseases ...
Jiang, Jyun-Yu, Ju, Chelsea J-T, Wang, Wei, Zhou, Guangyu   +3 more
core   +1 more source

Favorable outcome of patients with lung adenocarcinoma harboring POLE mutations and expressing high PD-L1

Molecular Cancer, 2018
Mutations in polymerase ε (POLE) confer favorable prognosis and outcomes in various cancer types, but their role in non-small cell lung cancer (NSCLC) is unknown.
Liang Liu, Jimmy Ruiz, Stacey S. O’Neill, Stefan C. Grant, W. Jeffrey Petty, Meng Yang, Kexin Chen, Umit Topaloglu, Boris Pasche, Wei Zhang   +9 more
doaj   +1 more source

Molecular species delimitation refines the taxonomy of native and nonnative physinine snails in North America

Scientific Reports, 2021
Being able to associate an organism with a scientific name is fundamental to our understanding of its conservation status, ecology, and evolutionary history.
Michael K. Young, Rebecca Smith, Kristine L. Pilgrim, Michael K. Schwartz   +3 more
doaj   +1 more source

Exome resequencing and GWAS for growth, ecophysiology, and chemical and metabolomic composition of wood of Populus trichocarpa. [PDF]

, 2019
BackgroundPopulus trichocarpa is an important forest tree species for the generation of lignocellulosic ethanol. Understanding the genomic basis of biomass production and chemical composition of wood is fundamental in supporting genetic improvement ...
Davis, Mark F, Famula, Randi, Fiehn, Oliver, Guerra, Fernando P, Holliday, Jason, Neale, David B, Richards, James H, Shuren, Richard, Stanton, Brian J, Suren, Haktan, Sykes, Robert   +10 more
core   +1 more source

Homozygous Deletions and Recurrent Amplifications Implicate New Genes Involved in Prostate Cancer

Neoplasia: An International Journal for Oncology Research, 2008
Prostate cancer cell lines provide ideal in vitro systems for the identification and analysis of prostate tumor suppressors and oncogenes. A detailed characterization of the architecture of prostate cancer cell line genomes would facilitate the study of ...
Wennuan Liu, Chunmei Carol Xie, Yi Zhu, Tao Li, Jishan Sun, Yu Cheng, Charles M. Ewing, Sue Dalrymple, Aubrey R. Turner, Jielin Sun, John T. Isascs, Bao-Li Chang, Siqun Lilly Zheng, William B. Isaacs, Jianfeng Xu   +14 more
doaj   +1 more source

Genomics and Forest Biology

The Plant Cell, 2002
Forest biologists have developed strong justifications for why trees should be viewed as model systems in plant biology, including the obvious challenges in extrapolating findings from annual, herbaceous plants to organisms that are distinguished by perennial growth, large size, complex ...
Wullschleger, Stan D., Jansson, Stefan, Taylor, Gail   +2 more
openaire   +2 more sources

Siberian larch (Larix sibirica Ledeb.) chloroplast genome and development of polymorphic chloroplast markers

BMC Bioinformatics, 2019
Background The main objectives of this study were sequencing, assembling, and annotation of chloroplast genome of one of the main Siberian boreal forest tree conifer species Siberian larch (Larix sibirica Ledeb.) and detection of polymorphic genetic ...
Eugeniya I. Bondar, Yuliya A. Putintseva, Nataliya V. Oreshkova, Konstantin V. Krutovsky   +3 more
doaj   +1 more source

De novo sequencing, assembly and functional annotation of Armillaria borealis genome

BMC Genomics, 2020
Background Massive forest decline has been observed almost everywhere as a result of negative anthropogenic and climatic effects, which can interact with pests, fungi and other phytopathogens and aggravate their effects. Climatic changes can weaken trees
Vasilina S. Akulova, Vadim V. Sharov, Anastasiya I. Aksyonova, Yuliya A. Putintseva, Natalya V. Oreshkova, Sergey I. Feranchuk, Dmitry A. Kuzmin, Igor N. Pavlov, Yulia A. Litovka, Konstantin V. Krutovsky   +9 more
doaj   +1 more source