Results 261 to 270 of about 563,010 (309)
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Journal of Molecular Biology, 1992
We have developed a hierarchical rule base system for identifying genes in DNA sequences. Atomic sites (such as initiation codons, stop codons, acceptor sites and donor sites) are identified by a number of different methods and evaluated by a set of filters and rules chosen to maximize sensitivity; these are combined into higher-order gene elements ...
R, Guigó +3 more
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We have developed a hierarchical rule base system for identifying genes in DNA sequences. Atomic sites (such as initiation codons, stop codons, acceptor sites and donor sites) are identified by a number of different methods and evaluated by a set of filters and rules chosen to maximize sensitivity; these are combined into higher-order gene elements ...
R, Guigó +3 more
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2008 International Symposium on Information Technology, 2008
With the increasingly popularity of genome sequencing, transforming such raw sequence data into knowledge remains a hard task. This project will develop an application for gene prediction using development tools such as Perl and PHP. The project will identify stretches of sequence for genomic DNA that is biologically functional including protein coding
null Hazrina Yusof Hamdani +1 more
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With the increasingly popularity of genome sequencing, transforming such raw sequence data into knowledge remains a hard task. This project will develop an application for gene prediction using development tools such as Perl and PHP. The project will identify stretches of sequence for genomic DNA that is biologically functional including protein coding
null Hazrina Yusof Hamdani +1 more
openaire +1 more source
Gene Annotation: Prediction and Testing
Annual Review of Genomics and Human Genetics, 2003Fifty years after the publication of DNA structure, the whole human genome sequence will be officially finished. This achievement marks the beginning of the task to catalogue every human gene and identify each of their function expression patterns. Currently, researchers estimate that there are about 30,000 human genes and approximately 70% of these ...
Jennifer L, Ashurst, John E, Collins
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2012
Evolutionary genomics is a field that relies heavily upon comparing genomes, that is, the full complement of genes of one species with another. However, given a genome sequence and little else, as is now often the case, genes must first be found and annotated before downstream analyses can be done.
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Evolutionary genomics is a field that relies heavily upon comparing genomes, that is, the full complement of genes of one species with another. However, given a genome sequence and little else, as is now often the case, genes must first be found and annotated before downstream analyses can be done.
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2009
Most computational gene-finding methods in current use are derived from the fields of natural language processing and speech recognition. These latter fields are concerned with parsing spoken or written language into functional components such as nouns, verbs, and phrases of various types.
William H. Majoros, Ian Korf, Uwe Ohler
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Most computational gene-finding methods in current use are derived from the fields of natural language processing and speech recognition. These latter fields are concerned with parsing spoken or written language into functional components such as nouns, verbs, and phrases of various types.
William H. Majoros, Ian Korf, Uwe Ohler
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Eukaryotic Gene Prediction Using GeneMark.hmm
Current Protocols in Bioinformatics, 2003AbstractIn this unit, eukaryotic GeneMark.hmm is presented as a method for detecting genes in eukaryotic DNA sequences. The eukaryotic GeneMark.hmm uses Markov models of protein coding and noncoding sequences, as well as positional nucleotide frequency matrices for prediction of the translational start, translational termination and splice sites.
Mark, Borodovsky +3 more
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Gene prediction and gene classes in Arabidopsis thaliana
Journal of Biotechnology, 2000Gene prediction methods for eukaryotic genomes still are not fully satisfying. One way to improve gene prediction accuracy, proven to be relevant for prokaryotes, is to consider more than one model of genes. Thus, we used our classification of Arabidopsis thaliana genes in two classes (CU(1) and CU(2)), previously delineated according to statistical ...
C, Mathé +5 more
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Gene function prediction with knowledge from gene ontology
International Journal of Data Mining and Bioinformatics, 2015Gene function prediction is an important problem in bioinformatics. Due to the inherent noise existing in the gene expression data, the attempt to improve the prediction accuracy resorting to new classification techniques is limited. With the emergence of Gene Ontology (GO), extra knowledge about the gene products can be extracted from GO and ...
Ying, Shen, Lin, Zhang
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