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Gene Regulatory Networks from Gene Ontology
2013Gene Ontology (GO) provides a controlled vocabulary and hierarchy of terms to facilitate the annotation of gene functions and molecular attributes. Given a set of genes, a Gene Ontology Network (GON) can be constructed from the corresponding GO annotations and semantic relations among GO terms.
Wenting Liu +5 more
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Evolutionarily conserved hierarchical gene regulatory networks for plant salt stress response
Nature Plants, 2021Ting-Ying Wu +5 more
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Gene regulatory networks in the Arabidopsis root
Current Opinion in Plant Biology, 2013Thanks to the increasing use of high-throughput tools in genetics, genomics, proteomics and metabolomics, a tremendous amount of information has been generated in the recent years. How these genes, transcripts, proteins and metabolites are inter-connected in a spatiotemporal context is one of the most ambitious goals that fundamental biology needs to ...
Miguel, De Lucas, Siobhan M, Brady
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Inferring Gene Regulatory Networks Using the Improved Markov Blanket Discovery Algorithm
Interdisciplinary Sciences Computational Life Sciences, 2021Wei Liu +6 more
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The Ciona Notochord Gene Regulatory Network
2018Complex gene regulatory networks are at the heart of cell fate specification and differentiation. The simple chordate Ciona has remarkable advantages for the dissection of these regulatory networks, including a stereotypically chordate but extremely small and simple embryo, a streamlined and compact genome, and highly efficient transgenesis by ...
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Gene regulatory network inference in the era of single-cell multi-omics
Nature Reviews Genetics, 2023Pau Badia-I-Mompel +2 more
exaly
KRAB zinc-finger proteins contribute to the evolution of gene regulatory networks
Nature, 2017Michael Imbeault +2 more
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SCENIC+: single-cell multiomic inference of enhancers and gene regulatory networks
Nature Methods, 2023Carmen Bravo González-Blas +2 more
exaly