Diverse reductive dehalogenases are associated with Clostridiales-enriched microcosms dechlorinating 1,2-dichloroethane [PDF]
, 2015 The achievement of successful biostimulation of active microbiomes for the cleanup of a polluted site is strictly dependent on the knowledge of the key microorganisms equipped with the relevant catabolic genes responsible for the degradation process.
Balloi, Annalisa +8 more
core +5 more sources
VBCG: 20 validated bacterial core genes for phylogenomic analysis with high fidelity and resolution
Microbiome, 2023 Background Phylogenomic analysis has become an inseparable part of studies of bacterial diversity and evolution, and many different bacterial core genes have been collated and used for phylogenomic tree reconstruction.
Renmao Tian, Behzad Imanian
doaj +1 more source
Whole-Genome Sequencing and Concordance Between Antimicrobial Susceptibility Genotypes and Phenotypes of Bacterial Isolates Associated with Bovine Respiratory Disease. [PDF]
, 2017 Extended laboratory culture and antimicrobial susceptibility testing timelines hinder rapid species identification and susceptibility profiling of bacterial pathogens associated with bovine respiratory disease, the most prevalent cause of cattle ...
Abdo, Zaid +13 more
core +2 more sources
Canine uterine bacterial infection induces upregulation of proteolysis-related genes and downregulation of homeobox and zinc finger factors. [PDF]
PLoS ONE, 2009 BACKGROUND: Bacterial infection with the severe complication of sepsis is a frequent and serious condition, being a major cause of death worldwide. To cope with the plethora of occurring bacterial infections there is therefore an urgent need to identify ...
Ragnvi Hagman +2 more
doaj +1 more source
The emergence and fate of horizontally acquired genes in Escherichia coli [PDF]
, 2008 Bacterial species, and even strains within species, can vary greatly in their gene contents and metabolic capabilities. We examine the evolution of this diversity by assessing the distribution and ancestry of each gene in 13 sequenced isolates of ...
Marri, P.R. +2 more
core +4 more sources
Bacterial resistance to antimicrobial agents and its impact on veterinary and human medicine [PDF]
, 2016 Background Antimicrobial resistance has become a major challenge in veterinary medicine, particularly in the context of bacterial pathogens that play a role in both humans and animals.
Aarestrup +123 more
core +3 more sources
Identifying bacterial genes and endosymbiont DNA with Glimmer
Bioinform., 2007 MOTIVATION The Glimmer gene-finding software has been successfully used for finding genes in bacteria, archaea and viruses representing hundreds of species.
A. Delcher +3 more
semanticscholar +1 more source
Increased variability of microbial communities in restored salt marshes nearly 30 years after tidal flow restoration [PDF]
, 2012 We analyzed microbial diversity and community composition from four salt marsh sites that were impounded for 40–50 years and subsequently restored and four unimpounded sites in southeastern Connecticut over one growing season.
Bernhard, Anne E +2 more
core +3 more sources
Sugar Lego: gene composition of bacterial carbohydrate metabolism genomic loci
Biology Direct, 2017 Background Bacterial carbohydrate metabolism is extremely diverse, since carbohydrates serve as a major energy source and are involved in a variety of cellular processes.
Anna Kaznadzey +2 more
doaj +1 more source
Site-Specific Conditions Change the Response of Bacterial Producers of Soil Structure-Stabilizing Agents Such as Exopolysaccarides and Lipopolysaccarides to Tillage Intensity [PDF]
, 2020 Agro-ecosystems experience huge losses of land every year due to soil erosion induced by poor agricultural practices such as intensive tillage. Erosion can be minimized by the presence of stable soil aggregates, the formation of which can be promoted by ...
Cania, Barbara +9 more
core +1 more source