Results 1 to 10 of about 114,348 (140)

Wheat chloroplast pangenome reveals frequent intramolecular recombination in the inverted repeat regions [PDF]

BMC Plant Biology
Background In eukaryotes, the mutation rate of the chloroplasts is lower than that of the nuclear genomes. Advances in Next-Generation Sequencing (NGS) and Third-Generation Sequencing (TGS) technologies, together with improvements in genome assembly ...
Hua Zhang, Xuebing Qiu, Zhiliang Zhang, Jijin Zhang, You Qing, Yafei Guo, Xinyue Song, Chengzhi Liang, Yanling Sun, Yang Zhao, Changbin Yin, Jing Wang, Fei Lu, Mingsheng Chen   +13 more
doaj   +2 more sources

Small RNA Profile in Moso Bamboo Root and Leaf Obtained by High Definition Adapters [PDF]

, 2014
Moso bamboo (Phyllostachy heterocycla cv. pubescens L.) is an economically important fast-growing tree. In order to gain better understanding of gene expression regulation in this important species we used next generation sequencing to profile small RNAs
A Kozomara, A Mortazavi, AC Mallory, AC Mallory, AD Jayaprakash, AK Goyal, AM Gustafson, AS Zanca, B Liu, B Wang, B Zhao, Biao Ding, C Lu, C Schommer, C-Y He, E Allen, G Szittya, H Zhao, H-S Guo, Hansheng Zhao, I Mohorianu, Irina Mohorianu, J-W Wang, JF Palatnik, JH Kim, K Kruszka, K Nikovics, K Prüfer, K Sorefan, L Gutierrez, L Wu, Li Yang, M Hafner, M Javelle, M Kang, M Yoshikawa, MB Stocks, MJ Axtell, ML Gifford, MM Alonso-Peral, O Borsani, P Zhelyazkova, Ping Xu, R Schwab, R Sunkar, R Sunkar, RE Rodriguez, S Lu, S Moxon, T Li, Tamas Dalmay, V Pantaleo, X Zhang, Y Meng, Y-J Zhang, Z Peng, Z Xu, Zhimin Gao   +57 more
core   +20 more sources

Anticodon table of the chloroplast genome and identification of putative quadruplet anticodons in chloroplast tRNAs

Scientific Reports, 2023
The chloroplast genome of 5959 species was analyzed to construct the anticodon table of the chloroplast genome. Analysis of the chloroplast transfer ribonucleic acid (tRNA) revealed the presence of a putative quadruplet anticodon containing tRNAs in the ...
Tapan Kumar Mohanta, Yugal Kishore Mohanta, Nanaocha Sharma   +2 more
doaj   +1 more source

Chloroplast Genome Traits Correlate With Organismal Complexity and Ecological Traits in Chlorophyta

Frontiers in Ecology and Evolution, 2021
A positive relationship between cell size and chloroplast genome size within chloroplast-bearing protists has been hypothesized in the past and shown in some case studies, but other factors influencing chloroplast genome size during the evolution of ...
Jiao Fang, Jiao Fang, Yangliang Chen, Yangliang Chen, Guoxiang Liu, Heroen Verbruggen, Huan Zhu, Huan Zhu   +7 more
doaj   +1 more source

Complete chloroplast genome of Sedum sarmentosum and chloroplast genome evolution in Saxifragales. [PDF]

PLoS ONE, 2013
Comparative chloroplast genome analyses are mostly carried out at lower taxonomic levels, such as the family and genus levels. At higher taxonomic levels, chloroplast genomes are generally used to reconstruct phylogenies.
Wenpan Dong, Chao Xu, Tao Cheng, Shiliang Zhou   +3 more
doaj   +1 more source

Phylogenic study of Lemnoideae (duckweeds) through complete chloroplast genomes for eight accessions [PDF]

PeerJ, 2017
Background Phylogenetic relationship within different genera of Lemnoideae, a kind of small aquatic monocotyledonous plants, was not well resolved, using either morphological characters or traditional markers.
Yanqiang Ding, Yang Fang, Ling Guo, Zhidan Li, Kaize He, Yun Zhao, Hai Zhao   +6 more
doaj   +2 more sources

Characterization of the complete chloroplast genome of Populus deltoides Zhonglin 2025

Mitochondrial DNA. Part B. Resources, 2020
The complete chloroplast genome of Populus deltoides was characterized by reference-based assembly using whole-genome sequencing data. The total chloroplast genome size of Populus deltoides included a pair of inverted repeat regions (IRs) of 27,649 bp ...
Weibing Zhuang, Xiaochun Shu, Ming Zhang, Tao Wang, Fengjiao Zhang, Ning Wang, Zhong Wang   +6 more
doaj   +1 more source

Organellar inheritance in the green lineage: insights from Ostreococcus tauri [PDF]

, 2013
Along the green lineage (Chlorophyta and Streptophyta), mitochondria and chloroplast are mainly uniparentally transmitted and their evolution is thus clonal. The mode of organellar inheritance in their ancestor is less certain.
Adam Eyre-Walker, Baur, Birky, Bonen, Boynton, Bruen, Correns, De Clerck, Derelle, Duret, Grimsley, Guindon, Gwenael Piganeau, Hasegawa, Hill, Hill, Houliston, Hua, Huang, Hurst, Hutson, Jancek, Kurtz, Larkin, Lewis, Lewontin, Li, MacAlpine, Marin, Marshall, Maréchal, Maynard Smith, McVean, Miyamura, Muller, Nei, Ness, Olson, Piganeau, Posada, Posada, R Development Core Team, Robbens, Rodríguez-Ezpeleta, Romain Blanc-Mathieu, Sager, Sager, Sager, Simpson, Sophie Sanchez-Ferandin, Städler, Sun, Sung, Swofford, Tamura, Tamura, Tsai   +56 more
core   +1 more source

Phylogeny of Prokaryotes and Chloroplasts Revealed by a Simple Composition Approach on All Protein Sequences from Complete Genomes Without Sequence Alignment [PDF]

, 2005
The complete genomes of living organisms have provided much information on their phylogenetic relationships. Similarly, the complete genomes of chloroplasts have helped to resolve the evolution of this organelle in photosynthetic eukaryotes.
C Lemieux, CR Woese, CR Woese, D Sankoff, DH Moreira, E Chatton, E Mayr, E Pennisi, F Tekaia, FitchWM, GI McFadden, GI McFadden, GW Stuart, GW Stuart, J Adachi, J Las Rivas De, J Lin, J Qi, J Qi, J.Q. Deng, JA Eisen, JD Palmer, JR Brown, K.H. Chu, KH Chu, L.Q. Zhou, M Li, M Turmel, M Turmel, MA Ragan, MW Gray, MW Gray, N Saitou, O Weiss, RF Doolittle, RF Doolittle, RL Charlebois, RS Gupta, S.C. Long, ST Fitz-Gibbon, SV Edwards, V.V. Anh, VL Stirewalt, W Martin, W Martin, W Martin, Z.G. Yu, ZG Yu, ZG Yu, ZG Yu, ZG Yu   +50 more
core   +3 more sources

Phylogenomic Analysis and Dynamic Evolution of Chloroplast Genomes in Salicaceae

Frontiers in Plant Science, 2017
Chloroplast genomes of plants are highly conserved in both gene order and gene content. Analysis of the whole chloroplast genome is known to provide much more informative DNA sites and thus generates high resolution for plant phylogenies. Here, we report
Yuan Huang, Yuan Huang, Jun Wang, Yongping Yang, Chuanzhu Fan, Jiahui Chen, Jiahui Chen   +6 more
doaj   +1 more source