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Computational genomics: mapping, comparison, and annotation of genomes.
2000The field of genomics provides many challenges to computer scientists and mathematicians. The area of computational genomics has been expanding recently, and the timely application of computer science in this field is proving to be an essential component of the large international effort in genomics.
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Recognition of regulatory sites by genomic comparison
Research in Microbiology, 1999Availability of complete bacterial genomes opens the way to the comparative approach to the recognition of transcription regulatory sites. Assumption of regulon conservation in conjunction with profile analysis provides two lines of independent evidence making it possible to make highly specific predictions.
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Step-by-Step Bacterial Genome Comparison
Thanks to advancements in genome sequencing and bioinformatics, thousands of bacterial genome sequences are available in public databases. This presents an opportunity to study bacterial diversity in unprecedented detail. This chapter describes a complete bioinformatics workflow for comparative genomics of bacterial genomes, including genome annotation,Dennis, Carhuaricra-Huaman +1 more
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BugView: A Tool for Genome Visualization and Comparison
2007We describe BugView, a cross-platform application for presenting and comparing the genomes of bacteria or eukaryotes. We give particular emphasis to its use in comparing the genes of related bacterial genomes, and consider different methods of automating the preparation of genome comparison files, including a new web-based facility.
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Genome Update: proteome comparisons
Microbiology, 2005Tim T, Binnewies +3 more
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Towards complete and error-free genome assemblies of all vertebrate species
Nature, 2021Mark J P Chaisson +2 more
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Translating cancer genomes and transcriptomes for precision oncology
Ca-A Cancer Journal for Clinicians, 2016Sunita Shankar, Sameek Roychowdhury
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MicroRNAome genome: A treasure for cancer diagnosis and therapy
Ca-A Cancer Journal for Clinicians, 2014Ioana Berindan-Neagoe +2 more
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Extreme genome reduction in symbiotic bacteria
Nature Reviews Microbiology, 2011John P. McCutcheon, Nancy A. Moran
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Genome evolution in filamentous plant pathogens: why bigger can be better
Nature Reviews Microbiology, 2012Sophien Kamoun, Sylvain Raffaele
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