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GeNePi: a graphics processing unit enhanced next-generation bioinformatics pipeline for whole-genome sequencing analysis. [PDF]

open access: yesBrief Bioinform
Marangoni S   +12 more
europepmc   +1 more source
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DO-GPU: Domain Optimizable Soft GPUs

2021 31st International Conference on Field-Programmable Logic and Applications (FPL), 2021
”Soft” GPUs are overlays that implement GPGPU-like data parallel processor architectures in FPGA logic to make FPGAs as software-programmable as ”hard” GPGPUs. Unlike hard GPUs, soft GPU architectures can be specialized to further improve efficiency by leveraging FPGA’s flexibility.
Rui Ma   +7 more
openaire   +1 more source

MVAPICH2-GPU: optimized GPU to GPU communication for InfiniBand clusters

Computer Science - Research and Development, 2011
Data parallel architectures, such as General Purpose Graphics Units (GPGPUs) have seen a tremendous rise in their application for High End Computing. However, data movement in and out of GPGPUs remain the biggest hurdle to overall performance and programmer productivity.
Hao Wang   +5 more
openaire   +1 more source

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