Results 121 to 130 of about 4,451 (294)

Spatially adaptive grand canonical ensemble Monte Carlo simulations

, 2005
The published version is located at http://pre.aps.org/abstract/PRE/v71/i2/e026702A spatially adaptive Monte Carlo method is introduced directly from the underlying microscopic mechanisms, which satisfies detailed balance, gives the correct noise, and ...
Katsoulakis, MA, Vlachos, DG, Chatterjee, A   +2 more
core  

An Integrated and Robust Deep Learning Framework for Denoising and Analyzing Single‐Cell Spatial Transcriptomics

Advanced Intelligent Systems, EarlyView.
Single‐cell Spatial Transcriptomics Analysis and Denoising Engine is introduced as a unified deep learning framework that jointly performs denoising, clustering, and gene prioritization in spatial transcriptomics. By integrating linear and nonlinear representations within a dual‐channel architecture, it improves robustness and accuracy, uncovers ...
Yaxuan Cui, Yang Cui, Ruheng Wang, Xin Zeng, Zheyong Zhu, Ding Yi, Ruihua Guo, Tetsuya Sakurai, Kenta Nakai, Xiucai Ye, Leyi Wei, Yong Chen   +11 more
wiley   +1 more source

Collision-energy dependence of deuteron cumulants and proton-deuteron correlations in Au+Au collisions at RHIC

Physics Letters B
We report the first measurements of cumulants, up to 4th order, of deuteron number distributions and proton-deuteron correlations in Au+Au collisions recorded by the STAR experiment in phase-I of Beam Energy Scan (BES) program at the Relativistic Heavy ...
M.I. Abdulhamid, B.E. Aboona, J. Adam, L. Adamczyk, J.R. Adams, I. Aggarwal, M.M. Aggarwal, Z. Ahammed, E.C. Aschenauer, S. Aslam, J. Atchison, V. Bairathi, J.G. Ball Cap, K. Barish, R. Bellwied, P. Bhagat, A. Bhasin, S. Bhatta, S.R. Bhosale, J. Bielcik, J. Bielcikova, J.D. Brandenburg, C. Broodo, X.Z. Cai, H. Caines, M. Calderón de la Barca Sánchez, D. Cebra, J. Ceska, I. Chakaberia, P. Chaloupka, B.K. Chan, Z. Chang, A. Chatterjee, D. Chen, J. Chen, J.H. Chen, Z. Chen, J. Cheng, Y. Cheng, S. Choudhury, W. Christie, X. Chu, H.J. Crawford, M. Csanád, G. Dale-Gau, A. Das, I.M. Deppner, A. Dhamija, P. Dixit, X. Dong, J.L. Drachenberg, E. Duckworth, J.C. Dunlop, J. Engelage, G. Eppley, S. Esumi, O. Evdokimov, O. Eyser, R. Fatemi, S. Fazio, C.J. Feng, Y. Feng, E. Finch, Y. Fisyak, F.A. Flor, C. Fu, C.A. Gagliardi, T. Galatyuk, T. Gao, F. Geurts, N. Ghimire, A. Gibson, K. Gopal, X. Gou, D. Grosnick, A. Gupta, W. Guryn, A. Hamed, Y. Han, S. Harabasz, M.D. Harasty, J.W. Harris, H. Harrison-Smith, W. He, X.H. He, Y. He, N. Herrmann, L. Holub, C. Hu, Q. Hu, Y. Hu, H. Huang, H.Z. Huang, S.L. Huang, T. Huang, X. Huang, Y. Huang, Y. Huang, T.J. Humanic, M. Isshiki, W.W. Jacobs, A. Jalotra, C. Jena, A. Jentsch, Y. Ji, J. Jia, C. Jin, X. Ju, E.G. Judd, S. Kabana, D. Kalinkin, K. Kang, D. Kapukchyan, K. Kauder, D. Keane, A. Khanal, Y.V. Khyzhniak, D.P. Kikoła, D. Kincses, I. Kisel, A. Kiselev, A.G. Knospe, H.S. Ko, L.K. Kosarzewski, L. Kumar, M.C. Labonte, R. Lacey, J.M. Landgraf, J. Lauret, A. Lebedev, J.H. Lee, Y.H. Leung, N. Lewis, C. Li, D. Li, H-S. Li, H. Li, W. Li, X. Li, Y. Li, Y. Li, Z. Li, X. Liang, Y. Liang, R. Licenik, T. Lin, Y. Lin, M.A. Lisa, C. Liu, G. Liu, H. Liu, L. Liu, T. Liu, X. Liu, Y. Liu, Z. Liu, T. Ljubicic, O. Lomicky, R.S. Longacre, E.M. Loyd, T. Lu, J. Luo, X.F. Luo, L. Ma, R. Ma, Y.G. Ma, N. Magdy, D. Mallick, R. Manikandhan, S. Margetis, C. Markert, H.S. Matis, G. McNamara, O. Mezhanska, K. Mi, S. Mioduszewski, B. Mohanty, M.M. Mondal, I. Mooney, M.I. Nagy, A.S. Nain, J.D. Nam, M. Nasim, D. Neff, J.M. Nelson, D.B. Nemes, M. Nie, G. Nigmatkulov, T. Niida, T. Nonaka, G. Odyniec, A. Ogawa, S. Oh, K. Okubo, B.S. Page, R. Pak, S. Pal, A. Pandav, T. Pani, A. Paul, B. Pawlik, D. Pawlowska, C. Perkins, J. Pluta, B.R. Pokhrel, M. Posik, T. Protzman, V. Prozorova, N.K. Pruthi, M. Przybycien, J. Putschke, Z. Qin, H. Qiu, C. Racz, S.K. Radhakrishnan, A. Rana, R.L. Ray, R. Reed, H.G. Ritter, C.W. Robertson, M. Robotkova, M.A. Rosales Aguilar, D. Roy, P. Roy Chowdhury, L. Ruan, A.K. Sahoo, N.R. Sahoo, H. Sako, S. Salur, S. Sato, B.C. Schaefer, W.B. Schmidke, N. Schmitz, F-J. Seck, J. Seger, R. Seto, P. Seyboth, N. Shah, P.V. Shanmuganathan, T. Shao, M. Sharma, N. Sharma, R. Sharma, S.R. Sharma, A.I. Sheikh, D. Shen, D.Y. Shen, K. Shen, S.S. Shi, Y. Shi, Q.Y. Shou, F. Si, J. Singh, S. Singha, P. Sinha, M.J. Skoby, N. Smirnov, Y. Söhngen, Y. Song, B. Srivastava, T.D.S. Stanislaus, M. Stefaniak, D.J. Stewart, B. Stringfellow, Y. Su, A.A.P. Suaide, M. Sumbera, C. Sun, X. Sun, Y. Sun, Y. Sun, B. Surrow, Z.W. Sweger, A.C. Tamis, A.H. Tang, Z. Tang, T. Tarnowsky, J.H. Thomas, A.R. Timmins, D. Tlusty, T. Todoroki, S. Trentalange, P. Tribedy, S.K. Tripathy, T. Truhlar, B.A. Trzeciak, O.D. Tsai, C.Y. Tsang, Z. Tu, J. Tyler, T. Ullrich, D.G. Underwood, I. Upsal, G. Van Buren, J. Vanek, I. Vassiliev, V. Verkest, F. Videbæk, S.A. Voloshin, F. Wang, G. Wang, J.S. Wang, J. Wang, K. Wang, X. Wang, Y. Wang, Y. Wang, Y. Wang, Z. Wang, J.C. Webb, P.C. Weidenkaff, G.D. Westfall, D. Wielanek, H. Wieman, G. Wilks, S.W. Wissink, R. Witt, J. Wu, J. Wu, X. Wu, X. Wu, B. Xi, Z.G. Xiao, G. Xie, W. Xie, H. Xu, N. Xu, Q.H. Xu, Y. Xu, Y. Xu, Z. Xu, Z. Xu, G. Yan, Z. Yan, C. Yang, Q. Yang, S. Yang, Y. Yang, Z. Ye, Z. Ye, L. Yi, K. Yip, Y. Yu, H. Zbroszczyk, W. Zha, C. Zhang, D. Zhang, J. Zhang, S. Zhang, W. Zhang, X. Zhang, Y. Zhang, Y. Zhang, Y. Zhang, Y. Zhang, Z.J. Zhang, Z. Zhang, Z. Zhang, F. Zhao, J. Zhao, M. Zhao, J. Zhou, S. Zhou, Y. Zhou, X. Zhu, M. Zurek, M. Zyzak   +366 more
doaj   +1 more source

Enabling grand-canonical Monte Carlo: Extending the flexibility of GROMACS through the GromPy python interface module

, 2012
We report on a python interface to the GROMACS molecular simulation package, GromPy (available at https://github.com/GromPy). This application programming interface (API) uses the ctypes python module that allows function calls to shared libraries, for ...
K. Anton Feenstra, Heringa, Jaap; id_orcid, Smith, J., Schulz, R., Pool, René; id_orcid, Smit, J.C., Schulz, Roland, Feenstra, K., Smith, Jeremy C., Roland Schulz, Jeremy C. Smith, Pool, René, Feenstra, K Anton, Jaap Heringa, Smith, Jeremy C, Höfling, M., Hoefling, Martin, Pool, R., Heringa, J., Heringa, Jaap, Feenstra, K. Anton, Hoefling, M., Feenstra, K.A., Feenstra, K Anton; id_orcid, Martin Hoefling, René Pool   +25 more
core   +1 more source

Thermodynamic topology of AdS black holes in rainbow gravity

European Physical Journal C: Particles and Fields
In this paper, we study the topology of four-dimensional AdS black holes with nonlinear sources in the framework of rainbow gravity. We apply the Duan’s $$\varphi $$ φ -mapping theory and the method of generalized free energy to study the topological ...
Ping Yin, Yaqin Liu, Juhua Chen, Yongjiu Wang   +3 more
doaj   +1 more source

Grand Canonical Ensemble Approaches in CP2K for Modeling Electrochemistry at Constant Electrode Potentials

In electrochemical experiments, the number of electrons of the electrode immersed in the electrolyte is usually variable. Additionally, the numbers of adsorbed substances on the surface of the electrode, the solvent molecules, and counter charge ions in ...
Chai, Ziwei; https://orcid.org/, Luber, Sandra; https://orcid.org/   +1 more
core   +1 more source

Thermodynamics of charged anti-de Sitter black holes in canonical ensemble

, 1999
As in the grand canonical treatment of Reissner-Nordstrom black holes in anti-de Sitter spacetime, the canonical ensemble formulation also shows that non-extremal black holes tend to have lower action than extremal ones.
P. Mitra, Mitra, P.
core   +1 more source

Quantum Heat Current in Terahertz‐Driven Phonon Systems

Advanced Physics Research, EarlyView.
We develop a quantum mechanical description of ultrafast thermodynamics on the example of a laser‐excited phonon mode. We show that the resulting quantum heat current exhibits non‐Markovian dynamics, which can be controlled by the pulse length. ABSTRACT The advent of high‐intensity ultrafast laser pulses has opened new opportunities for controlling and
Yulong Qiao, R. Matthias Geilhufe
wiley   +1 more source

Thermalization of quantum many-body scars in kinetically constrained systems

Physical Review Research
The phenomenon of quantum many-body scars (QMBS) has been studied both theoretically and experimentally, due to its unusual violation of the eigenstate thermalization hypothesis (ETH).
Jia-wei Wang, Xiang-Fa Zhou, Guang-Can Guo, Zheng-Wei Zhou   +3 more
doaj   +1 more source

Information Theoretic Interpretation of Forte's Entropy for the Grand Canonical Ensemble

, 1983
Forte's characterization of the entropy of a grand canonical ensemble in statistical mechanics has a natural interpretation in information theory. This entropy is also shown to be finite under the naturalassumption that the average message length be ...
SEMPI, Carlo
core