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Reactome graph database: Efficient access to complex pathway data. [PDF]

open access: yesPLoS Computational Biology, 2018
Reactome is a free, open-source, open-data, curated and peer-reviewed knowledgebase of biomolecular pathways. One of its main priorities is to provide easy and efficient access to its high quality curated data.
Antonio Fabregat   +9 more
doaj   +3 more sources

RELATIONAL DATABASE AND GRAPH DATABASE: A COMPARATIVE ANALYSIS [PDF]

open access: yesJournal of Process Management and New Technologies, 2017
Since 1970, relational database models have been in use for storing, manipulating and retrieving data. The importance of relational databases is going to decrease due to the exponential growth of data as it is difficult to work with large number of ...
Surajit Medhi, Hemanta K. Baruah
doaj   +4 more sources

Survey of graph database models [PDF]

open access: yesACM Computing Surveys, 2008
Graph database models can be defined as those in which data structures for the schema and instances are modeled as graphs or generalizations of them, and data manipulation is expressed by graph-oriented operations and type constructors. These models took
Renzo Angles, Claudio Gutierrez
exaly   +3 more sources

LinkedImm: a linked data graph database for integrating immunological data [PDF]

open access: yesBMC Bioinformatics, 2021
Background Many systems biology studies leverage the integration of multiple data types (across different data sources) to offer a more comprehensive view of the biological system being studied. While SQL (Structured Query Language) databases are popular
Syed Ahmad Chan Bukhari   +4 more
doaj   +2 more sources

Functional querying in graph databases [PDF]

open access: yesVietnam Journal of Computer Science, 2017
The paper is focused on a functional querying in graph databases. We consider labelled property graph model and mention also the graph model behind XML databases. An attention is devoted to functional modelling of graph databases both at a conceptual and
Jaroslav Pokorný
doaj   +2 more sources

A cancer graph: a lung cancer property graph database in Neo4j [PDF]

open access: yesBMC Research Notes, 2022
Objectives A novel graph data model of non-small cell lung cancer clinical and genomic data has been constructed with two aims: (1) provide a suitable model for facilitating graph analytics within the Neo4j framework or through tools which can interact ...
David Tuck
doaj   +2 more sources

Modelling of Graph Databases

open access: yesJournal of Advanced Engineering and Computation, 2017
Comparing graph databases with traditional,e.g., relational databases, some important database features are often missing there. Particularly, a graph database schema including integrity constraints is mostly not explicitly defined, also a conceptual ...
Jaroslav Pokorny
doaj   +3 more sources

Which Category Is Better: Benchmarking Relational and Graph Database Management Systems

open access: yesData Science and Engineering, 2019
Over decades, relational database management systems (RDBMSs) have been the first choice to manage data. Recently, due to the variety properties of big data, graph database management systems (GDBMSs) have emerged as an important complement to RDBMSs. As
Yijian Cheng   +4 more
doaj   +2 more sources

SynLethDB 2.0: a web-based knowledge graph database on synthetic lethality for novel anticancer drug discovery. [PDF]

open access: yesDatabase (Oxford), 2022
Two genes are synthetic lethal if mutations in both genes result in impaired cell viability, while mutation of either gene does not affect the cell survival.
Wang J   +6 more
europepmc   +2 more sources

Digital Contact Tracing Based on a Graph Database Algorithm for Emergency Management During the COVID-19 Epidemic: Case Study. [PDF]

open access: yesJMIR Mhealth Uhealth, 2021
Background The COVID-19 epidemic is still spreading globally. Contact tracing is a vital strategy in epidemic emergency management; however, traditional contact tracing faces many limitations in practice. The application of digital technology provides an
Mao Z, Yao H, Zou Q, Zhang W, Dong Y.
europepmc   +2 more sources

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