Results 101 to 110 of about 260,337 (262)

Refinement of amino‐acid conformation vs. difference density maps in time‐resolved serial femtosecond crystallography data analysis

FEBS Open Bio, EarlyView.
The dFoCC pipeline starts with observed DED and resting‐state coordinates, which are then used to generate a library of triggered states. Correlation analysis of the calculated DED features of each candidate vs observed DED permits quantitative evaluation of candidate structural quality.
Meng Iao Fong, Yuhei Hosokawa, Lars Oliver Essen, Manuel Maestre‐Reyna   +3 more
wiley   +1 more source

Semi-Supervised Learning for Multi-View Data Classification and Visualization

Information
Data visualization has several advantages, such as representing vast amounts of data and visually demonstrating patterns within it. Manifold learning methods help us estimate lower-dimensional representations of data, thereby enabling more effective ...
Najmeh Ziraki, Alireza Bosaghzadeh, Fadi Dornaika   +2 more
doaj   +1 more source

Cyclic azapeptide CD36 ligand attenuates cardiac injury and reduces long‐chain fatty acid accumulation after myocardial ischemia–reperfusion in mice

FEBS Open Bio, EarlyView.
In a murine model of myocardial ischemia and reperfusion (MI/R), the CD36 azapeptide ligand MPE‐298 reduces cardiac injury and transiently lowers left ventricular long‐chain fatty acids (LCFAs) accumulation 3 h after reperfusion, accompanied by a decrease of oxidative stress and inflammation‐associated genes' expression in the heart and adipose tissue.
Jade Gauvin, Naghme Radmannia, David N. Huynh, Liliane Ménard, Caroline Daneault, Maïté Veilleux, Ahsanullah Ahsanullah, André C. Carpentier, William D. Lubell, Matthieu Ruiz, Huy Ong, Sylvie Marleau, Simon‐Pierre Gravel   +12 more
wiley   +1 more source

On Kamada-Kawai graph layout with graph neural networks

Радіоелектронні і комп'ютерні системи
Traditional force-directed layout algorithms, such as the Kamada-Kawai (KK) method, are widely used for graph visualization due to their ability to produce aesthetically pleasing layouts.
Olena Linnyk, Lyudmyla Polyakova, Iryna Zaretska   +2 more
doaj   +1 more source

Hyperosmotic stress‐induced redistribution of pre‐mRNA cleavage factor I subunits is associated with shifts in alternative polyadenylation

FEBS Open Bio, EarlyView.
Hyperosmotic stress triggers the relocation of the CFIm complex from the nucleus to the cytoplasm. This shift creates a nuclear ‘stoichiometric bottleneck’, limiting CFIm availability for mRNA processing. Consequently, specific mRNAs like NUDT21 and DICER1 undergo targeted 3′UTR shortening, demonstrating how spatial protein dynamics drive rapid ...
Hitomi Soumiya, Masatake Osawa, Hidefumi Fukumitsu   +2 more
wiley   +1 more source

The Analysis of Complex Networks with Dynamic Graph Visualization

Моделирование и анализ информационных систем, 2010
The work describes a technique for dynamic graph visualization that helps us to analyze complex networks. Our method builds layouts for a sequence of graphs, while preserving the mental map. We show how to modify force-directed algorithms for the dynamic
S. N. Pupyrev, A. V. Tikhonov
doaj  

Evaluating the involvement of autolysosomes in the nuclear translocation of fluorescent proteins

FEBS Open Bio, EarlyView.
Endogenously expressed fluorescent proteins can be degraded by autophagy and transported to cell nuclei via the nuclear pore complex. But in some cell lines, for example, HeLa cells which are positive for immunoreactivity of a receptor ligand, such as UCN I, in cell nuclei, fusion of autolysosome with the nuclear envelope is involved in the nuclear ...
Keiichi Ikeda
wiley   +1 more source

Structured Data Visualization Instruction in Graduate Education: An Empirical Study of Conceptual and Procedural Development

Education Sciences
Information visualization is a crucial yet often underdeveloped research skill in graduate education. This study examined how practice-based visualization instruction enhances graduate students’ conceptual understanding and procedural competence in ...
Simón Gutiérrez de Ravé, Eduardo Gutiérrez de Ravé, Francisco José Jiménez-Hornero   +2 more
doaj   +1 more source

Loss of AMBRA1 activates MAPK and angiogenesis signaling pathways in melanoma cells

FEBS Open Bio, EarlyView.
Loss of AMBRA1 in melanoma cells activates multiple oncogenic pathways associated with tumor progression. Transcriptomic and protein network analyses revealed that AMBRA1 depletion enhances MAPK/ERK signaling, angiogenesis, TGF‐β/EMT signaling, and Wnt/axon guidance pathways.
Milad Ibrahim, Marco Corazzari, Iman Osman, Jane Armstrong, Noel Carter   +4 more
wiley   +1 more source

Juniper: A Tree+ Table Approach to Multivariate Graph Visualization. [PDF]

IEEE Trans Vis Comput Graph, 2018
Nobre C, Streit M, Lex A.
europepmc   +1 more source