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Bioinformatics for the Human Microbiome Project. [PDF]
PLoS Computational Biology, 2012 Microbes inhabit virtually all sites of the human body, yet we know very little about the role they play in our health. In recent years, there has been increasing interest in studying human-associated microbial communities, particularly since microbial ...
Dirk Gevers +3 more
doaj +15 more sources
The Human Microbiome Project: a community resource for the healthy human microbiome. [PDF]
PLoS Biology, 2012 The Human Microbiome Project (HMP) [1],[2] is a concept that was long in the making. After the Human Genome Project, interest grew in sequencing the “other genome" of microbes carried in and on the human body [3],[4]. Microbial ecologists, realizing that
Dirk Gevers +9 more
doaj +13 more sources
The gut mycobiome of the Human Microbiome Project healthy cohort [PDF]
Microbiome, 2017 Background Most studies describing the human gut microbiome in healthy and diseased states have emphasized the bacterial component, but the fungal microbiome (i.e., the mycobiome) is beginning to gain recognition as a fundamental part of our microbiome ...
Andrea K. Nash +11 more
doaj +7 more sources
Host genetic variation and its microbiome interactions within the Human Microbiome Project [PDF]
Genome Medicine, 2018 Background Despite the increasing recognition that microbial communities within the human body are linked to health, we have an incomplete understanding of the environmental and molecular interactions that shape the composition of these communities ...
Raivo Kolde +8 more
doaj +8 more sources
A Stoichioproteomic Analysis of Samples from the Human Microbiome Project [PDF]
Frontiers in Microbiology, 2017 Ecological stoichiometry (ES) uses organism-specific elemental content to explain differences in species life histories, species interactions, community organization, environmental constraints and even ecosystem function.
Briana Vecchio-Pagan +4 more
doaj +6 more sources
New EU projects delivering human microbiome applications [PDF]
Future Science OA, 2020 Over recent years, the number of studies and projects showing correlations between the human microbiome and diseases has increased enormously. The potential of the human microbiome for healthcare is big. However, many confounders have been discovered and
Dirk Hadrich
doaj +4 more sources
HMPDACC: a Human Microbiome Project Multi-omic data resource. [PDF]
Nucleic Acids Res, 2021 Abstract The Human Microbiome Project (HMP) explored microbial communities of the human body in both healthy and disease states. Two phases of the HMP (HMP and iHMP) together generated >48TB of data (public and controlled access) from multiple, varied omics studies of both the microbiome and associated hosts.
Creasy HH +12 more
europepmc +4 more sources
HMP16SData: Efficient Access to the Human Microbiome Project Through Bioconductor. [PDF]
Am J Epidemiol, 2019 AbstractPhase 1 of the NIH Human Microbiome Project (HMP) investigated 18 body subsites of 239 healthy American adults, to produce the first comprehensive reference for the composition and variation of the “healthy” human microbiome. Publicly-available data sets from amplicon sequencing of two 16S rRNA variable regions, with extensive controlled-access
Schiffer L +8 more
europepmc +7 more sources
Frontiers in Microbiology, 2022 The oral cavity is an important window for microbial communication between the environment and the human body. The oral microbiome plays an important role in human health.
Jinlan Wang +5 more
doaj +2 more sources
Interactive exploratory data analysis of Integrative Human Microbiome Project data using Metaviz. [PDF]
F1000Res, 2020 Wagner J +7 more
europepmc +4 more sources