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Emerging methods in protein co-evolution

open access: yesNature reviews genetics, 2013
Co-evolution is a fundamental component of the theory of evolution and is essential for understanding the relationships between species in complex ecological networks.
D. Juan, F. Pazos, A. Valencia
semanticscholar   +2 more sources
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An FPGA hardware acceleration of the indirect calculation of tree lengths method for phylogenetic tree reconstruction

2014 24th International Conference on Field Programmable Logic and Applications (FPL), 2014
In this work, we present an FPGA hardware implementation for a phylogenetic tree reconstruction with maximum parsimony algorithm. We base our approach on a particular stochastic local search algorithm that uses the Indirect Calculation of Tree Lengths method and the Progressive Neighborhood.
Henry Block, Tsutomu Maruyama
openaire   +1 more source

Structural diversity is a key driver of above-ground biomass in tropical forests

Plant Ecology & Diversity, 2023
Background A gamut of abiotic and biotic factors is related to the amount of above-ground biomass (AGB) produced in ecosystems. Some factors have direct and others indirect relationships with AGB.
Ayushi Kurian, K. N. Babu, N. Ayyappan
semanticscholar   +1 more source

Isolation and molecular characteristics of a recombinant feline calicivirus from Qingdao, China

Veterinary Research Forum, 2023
Feline calicivirus (FCV) is a highly contagious pathogen seriously affecting the upper respiratory tract and producing oral diseases in the feline. Despite widespread vaccination, the prevalence of FCV remains high.
Yongxiang Liu   +3 more
semanticscholar   +1 more source

Serologic and Molecular Prevalence of Severe Fever with Thrombocytopenia Syndrome Virus Among Poultry in the Republic of Korea

Vector Borne and Zoonotic Diseases, 2023
Background: Severe fever with thrombocytopenia syndrome (SFTS) is an emerging infectious disease caused by Dabie bandavirus, which belongs to the genus Bandavirus, family Phenuiviridae, and order Bunyavirales.
Ji-Min Rim   +5 more
semanticscholar   +1 more source

Triplication is the main evolutionary driving force of NLP transcription factor family in Chinese cabbage and related species.

International Journal of Biological Macromolecules, 2022
The NODULE-INCEPTION-like protein (NLP) is a plant-specific transcription factor (TF) family that plays an important role in both signal transduction and nitrate assimilation.
Huilong Chen   +8 more
semanticscholar   +1 more source

Impact of algicidal fungus Aspergillus welwitschiae GF6 on harmful bloom-forming cyanobacterium Microcystis aeruginosa: Growth and physiological responses.

Chemosphere
Harmful cyanobacterial blooms (HCBs) have become a common issue in freshwater worldwide. Biological methods for controlling HCBs are relatively cost effective and environmentally friendly.
I. Kuzikova   +6 more
semanticscholar   +1 more source

A series of patients infected with the emerging tick-borne Yezo virus in China: an active surveillance and genomic analysis.

Lancet. Infectious Diseases (Print)
BACKGROUND Yezo virus (YEZV) is an emerging tick-borne pathogen, which was initially reported in Japan in 2021. Only one patient had been reported in China so far. We aimed to describe the epidemiological, clinical, and laboratory findings of a series of
Mingzhu Zhang   +19 more
semanticscholar   +1 more source

Differential expression and co-localization of transcriptional factors during callus transition to differentiation for shoot organogenesis in the water fern Ceratopteris richardii.

Annals of Botany
BACKGROUND AND AIMS In flowering plants, regeneration can be achieved by a variety of approaches, and different sets of transcriptional factors are involved in these processes. However, regeneration in taxa other than flowering plants is still a mystery.
Yuan-Le Xiao, Gui-Sheng Li
semanticscholar   +1 more source

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