Results 91 to 100 of about 1,450 (209)

Functional comparison of EncB and EncC cargo proteins in iron storage within the Myxococcus xanthus encapsulin

FEBS Letters, EarlyView.
Encapsulins are protein nanocompartments that play an important role in iron storage. In the Myxococcus xanthus encapsulin system, two cargo proteins called EncB and EncC contribute to iron mineralization. Here, we show that EncB and EncC generate iron‐containing minerals with distinct chemical compositions, suggesting that the composition of stored ...
Harry B. McDowell, Thomas Walther, Egbert Hoiczyk   +2 more
wiley   +1 more source

SIRModel: Learning Spatial Intermediate Representation to Parameter-Efficiently Fine-Tune a Vision Language Model for Manipulation

AI
Long-horizon robotic manipulation requires a policy to bridge task-level semantic reasoning with metric three-dimensional interaction geometry. Existing vision–language–action policies usually acquire geometry implicitly from visual tokens or introduce ...
Li Lin, Minghao Shi, Tenglong Wang
doaj   +1 more source

Structural and biochemical analysis of a B12 superbinder

FEBS Letters, EarlyView.
BtuG proteins are vitamin B12 scavengers in Bacteroides thetaiotaomicron, a dominant human gut bacterium. We present crystal structures of three BtuG homologs bound to cobalamin and its precursor cobinamide, revealing picomolar binding affinities, among the highest known for any natural protein.
Jose M. Martinez Felices, Jacob J. Whittaker, Dirk J. Slotboom, Albert Guskov   +3 more
wiley   +1 more source

Structures of mycobacterial 3‐methylcrotonyl‐CoA carboxylase reveal carrier‐domain translocation between catalytic sites

FEBS Letters, EarlyView.
Mycobacterial 3‐methylcrotonyl‐CoA carboxylase uses a mobile biotin‐carrying domain to shuttle a carboxyl group between two catalytic sites, enabling carboxylation of 3‐methylcrotonyl‐CoA during leucine breakdown. Cryo‐electron microscopy captures the carrier at both sites and reveals an inward loop movement that may prevent futile rebinding to the ...
Ajit Yadav, Bogdan I. Florea, Sebastian Geibel   +2 more
wiley   +1 more source

Exploring Dynamic Hierarchical Fusion for Multi-View Clustering

IEEE Access
Multi-view clustering is effective at uncovering the latent structures within different views or modalities. However, existing approaches often oversimplify the problem by treating the contribution and granularity of information from all views as uniform,
Zhenshan Chen, Xuran Tian, Lizhen Gao, Gengbin Liao, Yang Shen, Kainan Zheng, Jianglin Fang   +6 more
doaj   +1 more source

From junk to function — How weak selection in eukaryotes builds new parts and drives genomic complexity

FEBS Letters, EarlyView.
How do genomes gain new functional parts? In eukaryotes, which tend to evolve under weak selection, much of the genome is junk. Palazzo and Qiu borrow the logic of Markov chains to show how non‐functional DNA becomes functional through the appearance of intermediate states, which arise due to epistasis, buffering, and biochemical messiness, allowing ...
Alexander F. Palazzo, Yi Qiu
wiley   +1 more source

Overcomplete intermediate representation of two-particle Green's functions and its relation to partial spectral functions

Physical Review Research
Two-particle response functions are a centerpiece of both experimental and theoretical quantum many-body physics. Yet, due to their size and discontinuity structure, they are challenging to handle numerically.
Selina Dirnböck, Seung-Sup B. Lee, Fabian B. Kugler, Sebastian Huber, Jan von Delft, Karsten Held, Markus Wallerberger   +6 more
doaj   +1 more source

The Shewanella oneidensis Fic enzyme SoFic targets the switch‐I region of EF‐Tu for AMPylation

FEBS Letters, EarlyView.
Fic enzymes mediate diverse post‐translational modifications across all domains of life, including AMPylation. Prokaryotic EF‐Tu can be AMPylated and deAMPylated by the conserved Fic enzyme SoFic. Structural and biochemical approaches were used to characterize the effect of AMPylation on EF‐Tu, SoFic's enzymatic activities, and the enzyme‐target ...
Svenja Runge, Vivian Pogenberg, Alexander Baumgart, Bente Siebels, Hartmut Schlüter, Michael Hecht‐Bucher, Aymelt Itzen   +6 more
wiley   +1 more source

Prospecting the protein design landscape

FEBS Letters, EarlyView.
This review outlines the current state of various protein design approaches. We discuss the current possibilities enabled by recently released tools, highlight future avenues to pursue in protein design, and underscore the crucial role of key databases and resources for successful protein design workflows.
Jakob R. Riccabona, Katharina T. Stonig, Jens Meiler, Clara T. Schoeder, Monica L. Fernández‐Quintero   +4 more
wiley   +1 more source

Corpus-Assisted Corpus-Assisted Evaluation of Cross-Cultural Representation in the Intermediate English Textbooks (Punjab Textbook Board)

Corporum, 2019
In the context of colonial subjugation, linguistic-imperialism, political-instability and economic-meltdown in Pakistan, entire educational setting inside a social construct has produced a complex body of text.
Haleema Khalid, Mohammad Riaz
doaj