Evaluating the ribosomal internal transcribed spacer (ITS) as a candidate dinoflagellate barcode marker. [PDF]
PLoS ONE, 2012 DNA barcoding offers an efficient way to determine species identification and to measure biodiversity. For dinoflagellates, an ancient alveolate group of about 2000 described extant species, DNA barcoding studies have revealed large amounts of ...
Rowena F Stern +12 more
doaj +6 more sources
Molecular phylogeny of Oncaeidae (Copepoda) using nuclear ribosomal internal transcribed spacer (ITS rDNA). [PDF]
PLoS ONE, 2017 Copepods belonging to the Oncaeidae family are commonly and abundantly found in marine zooplankton. In the Mediterranean Sea, forty-seven oncaeid species occur, of which eleven in the Gulf of Naples.
Iole Di Capua +5 more
doaj +8 more sources
Banana Classification Using Sanger Sequencing of the Ribosomal DNA Internal Transcribed Spacer (ITS) Region [PDF]
PlantsBanana (Musa spp.) is one of the most economically important horticultural crops. There are many types of banana, with differing ploidy (usually diploid, triploid, or tetraploid) and genome types (most containing the A or/and B genome).
Hongyun Zeng +3 more
doaj +4 more sources
Building of an Internal Transcribed Spacer (ITS) Gene Dataset to Support the Italian Health Service in Mushroom Identification [PDF]
Foods, 2021 This study aims at building an ITS gene dataset to support the Italian Health Service in mushroom identification. The target species were selected among those mostly involved in regional (Tuscany) poisoning cases. For each target species, all the ITS sequences already deposited in GenBank and BOLD databases were retrieved and accurately assessed for ...
Alice Giusti +2 more
exaly +7 more sources
Species-specific identification of Pseudomonas based on 16S–23S rRNA gene internal transcribed spacer (ITS) and its combined application with next-generation sequencing [PDF]
BMC Microbiology, 2022 Background Pseudomonas species are widely distributed in the human body, animals, plants, soil, fresh water, seawater, etc. Pseudomonas aeruginosa is one of the main pathogens involved in nosocomial infections.
Shuqian Hu +6 more
doaj +2 more sources
Phytotaxa, 2022 Yifru, Mistire, Stedje, Brita, Wondimu, Tigist, Bekele, Tamrat, Demissew, Sebsebe (2022): Molecular Phylogeny of Ethiopian Artemisia (Asteraceae) Species Based on Nuclear External Transcribed Spacer (ETS) and Internal Transcribed Spacer (ITS).
Stedje, Brita +4 more
core +3 more sources
INTERNAL TRANSCRIBED SPACER (ITS), AN IDEAL DNA BARCODE FOR SPECIES DISCRIMINATION IN CRAWFURDIA WALL. (GENTIANACEAE). [PDF]
Afr J Tradit Complement Altern Med, 2016 Background: DNA barcoding is a technique used to identify species based on species-specific differences in short regions of their DNA. It is widely used in species discrimination of medicinal plants and traditional medicines.Materials and Methods: In the
Zhang D, Jiang B, Duan L, Zhou N.
europepmc +6 more sources
Internal Transcribed Spacer (ITS) Fails Barcoding of the Genus Neotinea Rchb.f. (Orchidaceae)
Journal of Agricultural Sciences, 2021 Internal Transcribed Spacer (ITS) is one of the most used barcoding regions for the molecular phylogenetics and barcoding of orchids. Our aim in this study is to test the reliability of ITS on barcoding of closely related Neotinea spp., including ...
Kaan Hürkan, Kemal Melih Taşkın
doaj +6 more sources
Internal Transcribed Spacer (ITS) as Dna Barcoding to Identify Fungal Species: a Review [PDF]
Squalen, 2016 Despite the fact that fungi are important sources of both bioactive compounds and mycotoxins, and that they are very ubiquitous in our environment, their species identification is hampered by incomplete and often unclear literature.
Nurrahmi Dewi Fajarningsih
doaj +2 more sources
ITScan: a web-based analysis tool for Internal Transcribed Spacer (ITS) sequences. [PDF]
BMC Res Notes, 2014 Studies on fungal diversity and ecology aim to identify fungi and to investigate their interactions with each other and with the environment. DNA sequence-based tools are essential for these studies because they can speed up the identification process and access greater fungal diversity than traditional methods. The nucleotide sequence encoding for the
Ferro M, Antonio EA, Souza W, Bacci M.
europepmc +5 more sources