Results 11 to 20 of about 546,393 (311)

How do annotations affect Java code readability? [PDF]

Empirical Software Engineering, 2022
Abstract Context: Code annotation is a feature to define custom metadata about programming elements. Many modern frameworks and APIs use annotations to keep integration less verbose and closer to the corresponding code element. However, contrary to the initial intent, practitioners often complain about the negative impacts of annotations on ...
Eduardo Guerra 0001, Everaldo Gomes, Jeferson Ferreira, Igor Wiese, Phyllipe Lima, Marco Aurélio Gerosa, Paulo Meirelles   +6 more
openaire   +3 more sources

Semantic Annotation for Java. [PDF]

The Journal of Object Technology, 2010
This paper describes how to use annotation to provide semantic information. The applications include the automatic construction of a GUI so that the user input is constrained to a correct range (guarding the input). Elementary GUI examples include elements for a variety of data types.
D. Lyon
openaire   +3 more sources

High performance annotation-aware JVM for Java cards [PDF]

Proceedings of the 5th ACM international conference on Embedded software, 2005
Early applications of smart cards have focused in the area of personal security. Recently, there has been an increasing demand for networked, multi-application cards. In this new scenario, enhanced application-specific on-card Java applets and complex cryptographic services are executed through the smart card Java Virtual Machine (JVM).
Ana Azevedo, Arun Kejariwal, Alexander V. Veidenbaum, Alexandru Nicolau   +3 more
semanticscholar   +3 more sources

AnnaBot: A Static Verifier for Java Annotation Usage

Advances in Software Engineering, 2010
This paper describes AnnaBot, one of the first tools to verify correct use of Annotation-based metadata in the Java programming language. These Annotations are a standard Java 5 mechanism used to attach metadata to types, methods, or fields without using an external configuration file.
I. Darwin
openaire   +2 more sources

JWES: a new pipeline for whole genome/exome sequence data processing, management, and gene‐variant discovery, annotation, prediction, and genotyping

FEBS Open Bio, 2021
Whole genome and exome sequencing (WGS/WES) are the most popular next‐generation sequencing (NGS) methodologies and are at present often used to detect rare and common genetic variants of clinical significance.
Zeeshan Ahmed, Eduard Gibert Renart, Deepshikha Mishra, Saman Zeeshan   +3 more
doaj   +2 more sources

PanTools v3: functional annotation, classification and phylogenomics

Bioinform., 2022
Summary The ever-increasing number of sequenced genomes necessitates the development of pangenomic approaches for comparative genomics. Introduced in 2016, PanTools is a platform that allows pangenome construction, homology grouping and pangenomic read ...
Eef M. Jonkheer, Dirk-Jan M. van Workum, Siavash Sheikhizadeh Anari, B. Brankovics, J. R. Haan, L. Berke, T. Lee, D. Ridder, S. Smit   +8 more
semanticscholar   +1 more source

BG7: a new approach for bacterial genome annotation designed for next generation sequencing data. [PDF]

PLoS ONE, 2012
BG7 is a new system for de novo bacterial, archaeal and viral genome annotation based on a new approach specifically designed for annotating genomes sequenced with next generation sequencing technologies.
Pablo Pareja-Tobes, Marina Manrique, Eduardo Pareja-Tobes, Eduardo Pareja, Raquel Tobes   +4 more
doaj   +1 more source

Beyond Annotations: A Proposal for Extensible Java (XJ) [PDF]

2008 Eighth IEEE International Working Conference on Source Code Analysis and Manipulation, 2008
The XMF system is based on a bespoke language that includes some features that are key to Language Oriented Programming: grammars; syntax classes; parsers; quasi-quotes. This paper discusses various technologies and approaches for LOP and concludes that standardization is one of the key features that will bring LOP and Domain Specific Languages to the ...
Tony Clark 0001, Paul Sammut, James S. Willans   +2 more
openaire   +2 more sources

GeneViTo: Visualizing gene-product functional and structural features in genomic datasets

BMC Bioinformatics, 2003
Background The availability of increasing amounts of sequence data from completely sequenced genomes boosts the development of new computational methods for automated genome annotation and comparative genomics.
Promponas Vasilis J, Gkogkas Christos G, Vernikos Georgios S, Hamodrakas Stavros J   +3 more
doaj   +1 more source

The Proteogenomic Mapping Tool

BMC Bioinformatics, 2011
Background High-throughput mass spectrometry (MS) proteomics data is increasingly being used to complement traditional structural genome annotation methods.
Dandass Yoginder S, Malone Brandon M, Bridges Susan M, Wang Nan, Sanders William S, McCarthy Fiona M, Nanduri Bindu, Lawrence Mark L, Burgess Shane C   +8 more
doaj   +1 more source