Results 1 to 10 of about 213,871 (100)

Comparative Analysis of Proteomes of a Number of Nosocomial Pathogens by KEGG Modules and KEGG Pathways [PDF]

International Journal of Molecular Sciences, 2020
Nosocomial (hospital-acquired) infections remain a serious challenge for health systems. The reason for this lies not only in the local imperfection of medical practices and protocols. The frequency of infection with antibiotic-resistant strains of bacteria is growing every year, both in developed and developing countries. In this work, a pangenome and
Mikhail V. Slizen, Oxana V. Galzitskaya
openaire   +2 more sources

KEGG: integrating viruses and cellular organisms [PDF]

Nucleic Acids Research, 2020
Abstract KEGG (https://www.kegg.jp/) is a manually curated resource integrating eighteen databases categorized into systems, genomic, chemical and health information. It also provides KEGG mapping tools, which enable understanding of cellular and organism-level functions from genome sequences and other molecular datasets. KEGG mapping is
Minoru Kanehisa, Miho Furumichi, Yoko Sato, Mari Ishiguro-Watanabe, Mao Tanabe   +4 more
openaire   +3 more sources

KPP: KEGG Pathway Painter [PDF]

BMC Systems Biology, 2015
High-throughput technologies became common tools to decipher genome-wide changes of gene expression (GE) patterns. Functional analysis of GE patterns is a daunting task as it requires often recourse to the public repositories of biological knowledge. On the other hand, in many cases researcher's inquiry can be served by a comprehensive glimpse.
Ganiraju C. Manyam, Ganiraju C. Manyam, Ancha Baranova, Aybike Birerdinc   +3 more
openaire   +3 more sources

The KEGG databases at GenomeNet [PDF]

Nucleic Acids Research, 2002
The Kyoto Encyclopedia of Genes and Genomes (KEGG) is the primary database resource of the Japanese GenomeNet service (http://www.genome.ad.jp/) for understanding higher order functional meanings and utilities of the cell or the organism from its genome information.
Susumu Goto, Akihiro Nakaya, Shuichi Kawashima, Minoru Kanehisa   +3 more
openaire   +3 more sources

The KEGG resource for deciphering the genome [PDF]

Nucleic Acids Research, 2004
A grand challenge in the post-genomic era is a complete computer representation of the cell and the organism, which will enable computational prediction of higher-level complexity of cellular processes and organism behavior from genomic information. Toward this end we have been developing a knowledge-based approach for network prediction, which is to ...
Shuichi Kawashima, Minoru Kanehisa, Yasushi Okuno, Susumu Goto, Masahiro Hattori   +4 more
openaire   +2 more sources

kegg-pull-results.zip

, 2022
Executing 'unzip kegg-pull-results.zip' on the commandline will result in a kegg-pull-results/ directory containing a README.
huckvale, erik, Moseley, Hunter
openaire   +1 more source

iPathCaseKEGG: An iPad interface for KEGG metabolic pathways [PDF]

Health Information Science and Systems, 2013
Abstract Background Kyoto Encyclopedia of Genes and Genomes (KEGG) is an online and integrated molecular database for several organisms. KEGG has been a highly useful site, helping domain scientists understand, research, study, and teach metabolisms by linking sequenced genomes to higher level systematic functions ...
Stephen R. Johnson, A. Ercument Cicek, Gultekin Ozsoyoglu, Xinjian Qi   +3 more
openaire   +2 more sources

KOunt – A reproducible KEGG orthologue abundance workflow

Bioinformatics, 2023
AbstractSummaryAccurate gene prediction is essential for successful metagenome analysis. We present KOunt, a Snake-make pipeline, that precisely quantifies KEGG orthologue abundance.Availability and implementationKOunt is available on GitHub:https://github.com/WatsonLab/KOunt. The KOunt reference database is available on figshare:https://figshare.com/s/
Jennifer Mattock, Marina Martínez-Álvaro, Matthew A Cleveland, Rainer Roehe, Mick Watson   +4 more
openaire   +4 more sources

KEGG as a glycome informatics resource [PDF]

Glycobiology, 2006
Bioinformatics approaches to carbohydrate research have recently begun using large amounts of protein and carbohydrate data. In this field called glycome informatics, the foremost necessity is a comprehensive resource for genome-scale bioinformatics analysis of glycan data.
Shin Kawano, Susumu Goto, Toshisuke Kawasaki, Kiyoko F. Aoki-Kinoshita, Nobuhisa Ueda, Masami Hamajima, Minoru Kanehisa, Kosuke Hashimoto   +7 more
openaire   +3 more sources

KEGG: Kyoto Encyclopedia of Genes and Genomes [PDF]

Nucleic Acids Research, 2000
KEGG (Kyoto Encyclopedia of Genes and Genomes) is a knowledge base for systematic analysis of gene functions, linking genomic information with higher order functional information. The genomic information is stored in the GENES database, which is a collection of gene catalogs for all the completely sequenced genomes and some partial genomes with up-to ...
Susumu Goto, Minoru Kanehisa
openaire   +3 more sources