Results 11 to 20 of about 213,970 (199)
KEGG as a reference resource for gene and protein annotation [PDF]
Nucleic Acids Research, 2015 KEGG (http://www.kegg.jp/ or http://www.genome.jp/kegg/) is an integrated database resource for biological interpretation of genome sequences and other high-throughput data. Molecular functions of genes and proteins are associated with ortholog groups and stored in the KEGG Orthology (KO) database.
Kanehisa, Minoru +4 more
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annot8r: GO, EC and KEGG annotation of EST datasets [PDF]
BMC Bioinformatics, 2008 The expressed sequence tag (EST) methodology is an attractive option for the generation of sequence data for species for which no completely sequenced genome is available. The annotation and comparative analysis of such datasets poses a formidable challenge for research groups that do not have the bioinformatics infrastructure of major genome ...
Ralf Schmid, Ralf Schmid, Mark Blaxter
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KEGG for linking genomes to life and the environment [PDF]
Nucleic Acids Research, 2007 KEGG (http://www.genome.jp/kegg/) is a database of biological systems that integrates genomic, chemical and systemic functional information. KEGG provides a reference knowledge base for linking genomes to life through the process of PATHWAY mapping, which is to map, for example, a genomic or transcriptomic content of genes to KEGG reference pathways to
Masahiro Hattori +10 more
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KEGGViewer, a BioJS component to visualize KEGG Pathways [PDF]
F1000Research, 2014 Summary: Signaling pathways provide essential information on complex regulatory processes within the cell. They are moreover widely used to interpret and integrate data from large-scale studies, such as expression or functional screens. We present KEGGViewer a BioJS component to visualize KEGG pathways and to allow their visual integration with ...
Villaveces, J. +2 more
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A decision analysis model for KEGG pathway analysis [PDF]
BMC Bioinformatics, 2016 Abstract Background The knowledge base-driven pathway analysis is becoming the first choice for many investigators, in that it not only can reduce the complexity of functional analysis by grouping thousands of genes into just several hundred pathways, but also can increase the explanatory power for the experiment by ...
Du, Junli +6 more
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, 2023 This code is used for kegg enrichment analysis of metagenome. Please do not hesitate to contact me if you have any questions.
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KEGG for taxonomy-based analysis of pathways and genomes
Nucleic Acids Research, 2022 Abstract KEGG (https://www.kegg.jp) is a manually curated database resource integrating various biological objects categorized into systems, genomic, chemical and health information. Each object (database entry) is identified by the KEGG identifier (kid), which generally takes the form of a prefix followed by a five-digit number, and can
Minoru Kanehisa +4 more
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Microbial exopolysaccharide production by polyextremophiles in the adaptation to multiple extremes
FEBS Letters, EarlyView.Polyextremophiles are microorganisms that endure multiple extreme conditions by various adaptation strategies that also include the production of exopolysaccharides (EPSs). This review provides an integrated perspective on EPS biosynthesis, function, and regulation in these organisms, emphasizing their critical role in survival and highlighting their ...
Tracey M Gloster, Ebru Toksoy Öner
wiley +1 more source
New approach for understanding genome variations in KEGG [PDF]
Nucleic Acids Research, 2018 KEGG (Kyoto Encyclopedia of Genes and Genomes; https://www.kegg.jp/ or https://www.genome.jp/kegg/) is a reference knowledge base for biological interpretation of genome sequences and other high-throughput data. It is an integrated database consisting of three generic categories of systems information, genomic information and chemical information, and ...
Miho Furumichi +4 more
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FEBS Letters, EarlyView.Single‐cell RNA sequencing reveals an opposite role of SLPI in basal tumors based on metastatic spread, along with shared activation of specific regulons in cancer cells and mature luminal lactocytes, as well as downregulation of MALAT1 and NEAT1 in the latter.
Pietro Ancona +4 more
wiley +1 more source