Results 21 to 30 of about 245,138 (311)
Czech Journal of Animal Science, 2016 When analyzing phenotypes undergoing a complex mode of inheritance, it is of great interest to switch the scope from single genes to gene pathways, which form better defined functional units.
T. Suchocki +2 more
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KOunt – A reproducible KEGG orthologue abundance workflow
Bioinformatics, 2023 AbstractSummaryAccurate gene prediction is essential for successful metagenome analysis. We present KOunt, a Snake-make pipeline, that precisely quantifies KEGG orthologue abundance.Availability and implementationKOunt is available on GitHub:https://github.com/WatsonLab/KOunt. The KOunt reference database is available on figshare:https://figshare.com/s/
Jennifer Mattock +4 more
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Comparative Analysis of Proteomes of a Number of Nosocomial Pathogens by KEGG Modules and KEGG Pathways [PDF]
International Journal of Molecular Sciences, 2020 Nosocomial (hospital-acquired) infections remain a serious challenge for health systems. The reason for this lies not only in the local imperfection of medical practices and protocols. The frequency of infection with antibiotic-resistant strains of bacteria is growing every year, both in developed and developing countries. In this work, a pangenome and
Mikhail V. Slizen, Oxana V. Galzitskaya
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CogNet: classification of gene expression data based on ranked active-subnetwork-oriented KEGG pathway enrichment analysis [PDF]
PeerJ Computer Science, 2021 Most of the traditional gene selection approaches are borrowed from other fields such as statistics and computer science, However, they do not prioritize biologically relevant genes since the ultimate goal is to determine features that optimize model ...
Malik Yousef +2 more
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In Silico Pleiotropy Analysis in KEGG Signaling Networks Using a Boolean Network Model
Biomolecules, 2022 Pleiotropy, which refers to the ability of different mutations on the same gene to cause different pathological effects in human genetic diseases, is important in understanding system-level biological diseases.
Maulida Mazaya, Yung-Keun Kwon
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KEMET – A python tool for KEGG Module evaluation and microbial genome annotation expansion
Computational and Structural Biotechnology Journal, 2022 Background: The rapid accumulation of sequencing data from metagenomic studies is enabling the generation of huge collections of microbial genomes, with new challenges for mapping their functional potential.
Matteo Palù +6 more
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, 2022 Executing 'unzip kegg-pull-results.zip' on the commandline will result in a kegg-pull-results/ directory containing a README.
huckvale, erik, Moseley, Hunter
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Journal of Pain Research, 2021 Peng Chen,1 Dongsheng Lin,2 Chen Wang,2 Cuiwen Song,1 Wenjing Wang,1 Jinglian Qu,1 Zhibing Wu2 1Basic Medical School, Guizhou University of Traditional Chinese Medicine, Guiyang, Guizhou, People’s Republic of China; 2First Clinical Medical School ...
Chen P +6 more
doaj
Analysis of tumor suppressor genes based on gene ontology and the KEGG pathway. [PDF]
PLoS ONE, 2014 Cancer is a serious disease that causes many deaths every year. We urgently need to design effective treatments to cure this disease. Tumor suppressor genes (TSGs) are a type of gene that can protect cells from becoming cancerous.
Jing Yang +4 more
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Frontiers in Genetics, 2022 Protein–protein interactions (PPIs) are extremely important for gaining mechanistic insights into the functional organization of the proteome. The resolution of PPI functions can help in the identification of novel diagnostic and therapeutic targets with
Lili Yang +6 more
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