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Efficient algorithms for lateral gene transfer problems

Proceedings of the fifth annual international conference on Computational biology, 2001
This paper develops a model for lateral gene transfer events (a.k.a. horizontal gene transfer events) between a set of gene trees T1, T2, …, Tk and a species tree S. To the best of our knowledge, this model possesses a higher degree of biological and mathematical soundness than any other model proposed in the literature.
Michael T. Hallett, Jens Lagergren
openaire   +2 more sources

Trends and barriers to lateral gene transfer in prokaryotes

Current Opinion in Microbiology, 2011
Gene acquisition by lateral gene transfer (LGT) is an important mechanism for natural variation among prokaryotes. Laboratory experiments show that protein-coding genes can be laterally transferred extremely fast among microbial cells, inherited to most of their descendants, and adapt to a new regulatory regime within a short time.
Popa O, Dagan T
openaire   +2 more sources

Lateral gene transfer and the nature of bacterial innovation

Nature, 2000
Unlike eukaryotes, which evolve principally through the modification of existing genetic information, bacteria have obtained a significant proportion of their genetic diversity through the acquisition of sequences from distantly related organisms.
H, Ochman, J G, Lawrence, E A, Groisman
openaire   +2 more sources

Lateral gene transfer in phylogeny of azoreductase enzyme

Computational Biology and Chemistry, 2008
This paper attempts to reconstruct the phylogeny of azoreductase enzyme from different organisms and compare it with the small subunit rRNA-based phylogeny of the organisms. The two phylogenies were found to be incongruent, indicating several events of lateral transfer of azoreductase gene between phylogenetically diverse organisms.
Amit Bafana, Tapan Chakrabarti
openaire   +3 more sources

Reconciling the many faces of lateral gene transfer

Trends in Microbiology, 2002
Jeffrey Lawrence, Howard Ochman
exaly   +2 more sources

AUTOMATING THE SEARCH FOR LATERAL GENE TRANSFER

Proceedings of the 4th Asia-Pacific Bioinformatics Conference, 2005
openaire   +4 more sources

Lateral Gene Transfer Mechanisms and Pan-genomes in Eukaryotes

Trends in Parasitology, 2020
John Archibald   +2 more
exaly  

Lateral Gene Transfer of Anion-Conducting Channelrhodopsins between Green Algae and Giant Viruses

Current Biology, 2020
Ruth-Anne Sandaa   +2 more
exaly  

Detection of lateral gene transfer among microbial genomes

Current Opinion in Genetics and Development, 2001
Mark Ragan
exaly  

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