Balancing read length and sequencing depth: Optimizing Nanopore long‐read sequencing for monocots with an emphasis on the Liliales [PDF]
Applications in Plant Sciences, 2023 Premise We present approaches used to generate long‐read Nanopore sequencing reads for the Liliales and demonstrate how modifications to standard protocols directly impact read length and total output.
Jacob B Landis +2 more
exaly +3 more sources
Phylogenomic resolution of order- and family-level monocot relationships using 602 single-copy nuclear genes and 1375 BUSCO genes [PDF]
Frontiers in Plant Science, 2022 We assess relationships among 192 species in all 12 monocot orders and 72 of 77 families, using 602 conserved single-copy (CSC) genes and 1375 benchmarking single-copy ortholog (BUSCO) genes extracted from genomic and transcriptomic datasets ...
Prakash Raj Timilsena +23 more
doaj +2 more sources
The complete chloroplast genome of a shrub species, Smilax glabra (Smilacaceae) from Guangdong, China [PDF]
Mitochondrial DNA. Part B. Resources, 2021 Smilax glabra is a perennial woody scandent shrub, of which the dried aerial tuber has been used as Chinese medicine. Here, we sequenced S. glabra and assembled its complete chloroplast (cp) genome.
Yi Zhang +5 more
doaj +2 more sources
The complete chloroplast genome and phylogenetic analysis of Smilax moranensis (Liliales: Smilacaceae) [PDF]
Mitochondrial DNA. Part B. Resources, 2022 Smilax moranensis M.Martens & Galeotti 1842 is an important medicinal plant widely distributed in warm and temperate climates. In this paper, the complete chloroplast (cp) genome of S.
Baoyu Ji, Lixin Pei, Ning Cui
doaj +2 more sources
Phylogeny, Age, and Evolution of Tribe Lilieae (Liliaceae) Based on Whole Plastid Genomes [PDF]
Frontiers in Plant Science, 2022 Tribe Lilieae, encompassing Lilium, Notholirion, Cardiocrinum, and Fritillaria, includes economically important crops with a horticultural and medicinal value.
Juan Li +9 more
doaj +2 more sources
Novel brood-site pollination mutualism between sympetalous Heterosmilax (Smilacaceae, Liliales) and a cecidomyiid gall midge (Cecidomyiidae, Diptera) breeding in fallen male flowers [PDF]
ZooKeysHeterosmilax is a unique dioecious genus of Smilacaceae (Liliales, Monocotyledon) in that both male and female flowers are sympetalous, ellipsoid, and almost closed. Our field observations in the Ryukyu Islands of Japan showed that H.
Makoto Kato, Atsushi Kawakita
doaj +4 more sources
The giant genome of lily provides insights into the hybridization of cultivated lilies [PDF]
Nature CommunicationsLilies are economically important monocots known for their ornamental flowers, bulbs, and large genomes. The absence of their genomic information has impeded evolutionary studies and genome-based breeding efforts.
Yuwei Liang +24 more
doaj +2 more sources
Rapid detection of Tulipalin A with SESI-Orbitrap MS: an exploration across spring flowers [PDF]
Plant MethodsBackground Allergic contact dermatitis and chronic actinic dermatitis are frequently observed among florists and gardeners due to exposure to potentially allergenic plants and plant products.
An N. T. Phan +3 more
doaj +2 more sources
Comparative Chloroplast Genomics of Fritillaria (Liliaceae), Inferences for Phylogenetic Relationships between Fritillaria and Lilium and Plastome Evolution [PDF]
Plants, 2020 Fritillaria is a genus that has important medicinal and horticultural values. The study involved the most comprehensive chloroplast genome samples referring to Old and New World clades of Fritillaria for marker selection and phylogenetic studies.
Jiao Huang +5 more
doaj +2 more sources
Assembly and comparative analysis of the complete mitochondrial genome of Fritillaria ussuriensis Maxim. (Liliales: Liliaceae), an endangered medicinal plant [PDF]
BMC GenomicsBackground Fritillaria ussuriensis is an endangered medicinal plant known for its notable therapeutic properties. Unfortunately, its population has drastically declined due to the destruction of forest habitats.
Ping Xie +13 more
doaj +2 more sources