Results 11 to 20 of about 10,385 (265)

happi: a hierarchical approach to pangenomics inference

Genome Biology, 2023
Recovering metagenome-assembled genomes (MAGs) from shotgun sequencing data is an increasingly common task in microbiome studies, as MAGs provide deeper insight into the functional potential of both culturable and non-culturable microorganisms.
Pauline Trinh, David S. Clausen, Amy D. Willis   +2 more
doaj   +1 more source

Characterization of metagenome-assembled genomes from the International Space Station

Microbiome, 2023
Background Several investigations on the microbial diversity and functional properties of the International Space Station (ISS) environment were carried out to understand the influence of spaceflight conditions on the microbial population.
Nitin K. Singh, Jason M. Wood, Jose Patane, Livia Maria Silva Moura, Jonathan Lombardino, João Carlos Setubal, Kasthuri Venkateswaran   +6 more
doaj   +1 more source

Minority Scholars and Insider-Outsider Researcher Status: Challenges along a Personal, Professional and Political Continuum

Forum: Qualitative Social Research, 2018
In this article, I examine some of the methodological issues present for minority scholars when conducting research with an "insider-outsider" researcher status.
Mags Crean
doaj   +1 more source

Functional-Taxonomic Scaling Resolves Conflicting Average Genome Size Estimates Across Environmental Gradients. [PDF]

Adv Sci (Weinh)
Based on genome size‐functional breadth theory, we introduce and validate a framework that adjudicates conflicting average genome size (AGS) estimates by testing which estimate yields a gap between scaled functional diversity and scaled taxonomic diversity that is consistent with the expected positive association between genome size and gene functional
Zhu H, Chen X, Li Q, Sun C, Xia H, Huang Y, Wang C, Chen P, Gao C.   +8 more
europepmc   +2 more sources

MinION sequencing from sea ice cryoconites leads to de novo genome reconstruction from metagenomes

Scientific Reports, 2021
Genome reconstruction from metagenomes enables detailed study of individual community members, their metabolisms, and their survival strategies. Obtaining high quality metagenome-assembled genomes (MAGs) is particularly valuable in extreme environments ...
Catherine Maggiori, Isabelle Raymond-Bouchard, Laura Brennan, David Touchette, Lyle Whyte   +4 more
doaj   +1 more source

Identification and verification of microtubule associated genes in lung adenocarcinoma

Scientific Reports, 2023
Associated with high morbidity and mortality, lung adenocarcinoma (LUAD) is lacking in effective prognostic prediction and treatment. As chemotherapy drugs commonly used in clinics, microtubule-targeting agents (MTAs) are limited by high toxicity and ...
YuHui Wei, CaiZhen Yang, JinMei Wei, WenTao Li, YuanWen Qin, GuangNan Liu   +5 more
doaj   +1 more source

Insights into ecological roles of uncultivated bacteria in Katase hot spring sediment from long-read metagenomics

Frontiers in Microbiology, 2022
Diverse yet-uncultivated bacteria and archaea, i.e., microbial dark matter, are present in terrestrial hot spring environments. Numerous metagenome-assembled genomes (MAGs) of these uncultivated prokaryotes by short-read metagenomics have been reported ...
Shingo Kato, Sachiko Masuda, Arisa Shibata, Ken Shirasu, Moriya Ohkuma   +4 more
doaj   +1 more source

Dataset for Genome Sequencing and De Novo Assembly of the Candidate Phyla Radiation in Supragingival Plaque

Canadian Journal of Infectious Diseases and Medical Microbiology, 2022
The Candidate Phyla Radiation (CPR), as a newly discovered and difficult-to-culture bacterium, accounts for the majority of the bacterial domain, which may be related to various oral diseases, including dental caries.
Song Jiang, Jie Nie, Yuxing Chen, Shiying Zhang, Xiaoyan Wang, Feng Chen   +5 more
doaj   +1 more source

Dataset of 143 metagenome-assembled genomes from the Arctic and Atlantic Oceans, including 21 for eukaryotic organisms

Data in Brief, 2023
This article presents metagenome-assembled genomes (MAGs) for both eukaryotic and prokaryotic organisms originating from the Arctic and Atlantic oceans, along with gene prediction and functional annotation for MAGs from both domains.
Anthony Duncan, Kerrie Barry, Chris Daum, Emiley Eloe-Fadrosh, Simon Roux, Katrin Schmidt, Susannah G. Tringe, Klaus U. Valentin, Neha Varghese, Asaf Salamov, Igor V. Grigoriev, Richard M. Leggett, Vincent Moulton, Thomas Mock   +13 more
doaj   +1 more source

DAS PRAETERITOPRAESENS MAG. [PDF]

Beiträge zur Geschichte der deutschen Sprache und Literatur (PBB), 1891
n ...
openaire   +1 more source