Results 1 to 10 of about 19,692 (115)

Combining Flow Cytometry and Metagenomics Improves Recovery of Metagenome-Assembled Genomes in a Cell Culture from Activated Sludge

Microorganisms, 2023
The recovery of metagenome-assembled genomes is biased towards the most abundant species in a given community. To improve the identification of species, even if only dominant species are recovered, we investigated the integration of flow cytometry cell ...
Ulisses Rocha, João Pedro Saraiva, Hauke Harms   +2 more
exaly   +3 more sources

Gut microbial community of patients with Parkinson’s disease analyzed using metagenome-assembled genomes [PDF]

Neural Regeneration Research
Previous investigations into gut microbiota dysbiosis in patients with Parkinson’s disease have relied on 16S rRNA amplicon sequencing and assembly-free metagenomic approaches.
Yi Zhang, Chengjun Mo, Xiaoqin He, Qin Xiao, Xiaodong Yang   +4 more
doaj   +2 more sources

Metagenomes and metagenome-assembled genomes from tidal lagoons at a New York City waterfront park [PDF]

PeerJ
New York City parks serve as potential sites of both social and physical climate resilience, but relatively little is known about how microbial organisms and processes contribute to the functioning of these deeply human-impacted ecosystems. We report the
Sally Kong, Eliana Abrams, Yehuda Binik, Christina Cappelli, Mathew Chu, Taiyo Cornett, Isayah Culbertson, Epifania Garcia, Jada Henry, Kristy Lam, D.B. Lampman, Grace Morenko, Illusion Rivera, Tanasia Swift, Isabella Torres, Rayven Velez, Elliot Waxman, Serena Wessely, Anthony Yuen, Casey K. Lardner, J.L. Weissman   +20 more
doaj   +3 more sources

Metagenome-Assembled Genomes (MAGs): Advances, Challenges, and Ecological Insights [PDF]

Microorganisms
Metagenome-assembled genomes (MAGs) have revolutionized microbial ecology by enabling the genome-resolved study of uncultured microorganisms directly from environmental samples.
Salvador Mirete, Mercedes Sánchez-Costa, Jorge Díaz-Rullo, Carolina González de Figueras, Pablo Martínez-Rodríguez, José Eduardo González-Pastor   +5 more
doaj   +2 more sources

Eukaryotic genomes from a global metagenomic data set illuminate trophic modes and biogeography of ocean plankton

mBio, 2023
Metagenomics is a powerful method for interpreting the ecological roles and physiological capabilities of mixed microbial communities. Yet, many tools for processing metagenomic data are neither designed to consider eukaryotes nor are they built for an ...
Harriet Alexander, Sarah K. Hu, Arianna I. Krinos, Maria Pachiadaki, Benjamin J. Tully, Christopher J. Neely, Taylor Reiter   +6 more
doaj   +1 more source

Conservation of Energetic Pathways for Electroautotrophy in the Uncultivated Candidate Order Tenderiales

mSphere, 2022
Electromicrobiology can be used to understand extracellular electron uptake in previously undescribed chemolithotrophs. Enrichment and characterization of the uncultivated electroautotroph “Candidatus Tenderia electrophaga” using electromicrobiology led ...
Brian J. Eddie, Lina J. Bird, Claus Pelikan, Marc Mussmann, Clara Martínez-Pérez, Princess Pinamang, Anthony P. Malanoski, Sarah M. Glaven   +7 more
doaj   +1 more source

Metagenome-assembled genomes recovered from the datasets of a high-altitude Himalayan hot spring Khirganga, Himachal Pradesh, India

Data in Brief, 2021
Khirganga, a pristine hot spring that lies in the Parvati Valley within the Northern Himalayas characterised with unique white colour microbial mat and divine water with healing abilities.
Shekhar Nagar, Chandni Talwar, Meghali Bharti, Sheetal Yadav, Sneha Siwach, Ram Krishan Negi   +5 more
doaj   +1 more source

Do the human gut metagenomic species possess the minimal set of core functionalities necessary for life?

BMC Genomics, 2020
Background Advances in bioinformatics recently allowed for the recovery of ‘metagenomes assembled genomes’ from human microbiome studies carried on with shotgun sequencing techniques.
Matteo Soverini, Simone Rampelli, Silvia Turroni, Patrizia Brigidi, Elena Biagi, Marco Candela   +5 more
doaj   +1 more source

Metagenome sequencing and 768 microbial genomes from cold seep in South China Sea

Scientific Data, 2022
Measurement(s) metagenome assembled genomes Technology Type(s) metagenome sequencing and genome binning Sample Characteristic - Organism microorganism Sample Characteristic - Environment marine cold seep biome Sample Characteristic - Location South China
Huan Zhang, Minxiao Wang, Hao Wang, Hao Chen, Lei Cao, Zhaoshan Zhong, Chao Lian, Li Zhou, Chaolun Li   +8 more
doaj   +1 more source

Recovery of complete genomes and non-chromosomal replicons from activated sludge enrichment microbial communities with long read metagenome sequencing

npj Biofilms and Microbiomes, 2021
New long read sequencing technologies offer huge potential for effective recovery of complete, closed genomes from complex microbial communities. Using long read data (ONT MinION) obtained from an ensemble of activated sludge enrichment bioreactors we ...
Krithika Arumugam, Irina Bessarab, Mindia A. S. Haryono, Xianghui Liu, Rogelio E. Zuniga–Montanez, Samarpita Roy, Guanglei Qiu, Daniela I. Drautz–Moses, Ying Yu Law, Stefan Wuertz, Federico M. Lauro, Daniel H. Huson, Rohan B. H. Williams   +12 more
doaj   +1 more source