Results 21 to 30 of about 537,462 (223)
Metagenome assembled genomes are for eukaryotes too
Cell Genomics, 2022 Environmental community sequencing is suitable for producing metagenome assembled genomes (MAGs) of prokaryotes, but there is the perception that it cannot work for eukaryotes. In this issue of Cell Genomics, Delmont et al(1) process a massive sequencing dataset from marine plankton to produce 683 eukaryotic MAGs; the study also includes useful ...
Massana, Ramon, López-Escardó, David
openaire +2 more sources
Metagenome-assembled genomes of Cyanobacteria in cryoconite
, 2022 These data are associated with the manuscript "Metagenomics reveals global-scale contrasts in nitrogen cycling and cyanobacterial light harvesting mechanisms in glacier cryoconite".
Takumi Murakami (10828728)
core +2 more sources
Metagenome assembled genomes (MAGs)
, 2022 Fasta files of metagenome assembled genomes (MAGs) from two metagenomes from enrichment cultures inoculated with pulp mill granules.
Camilla Nesbo (9996431)
core +2 more sources
Metagenome-Assembled Genomes from Appalachian Acid Mine Drainage Sites [PDF]
, 2023 Here, we report 7 metagenome-assembled genomes (MAGs) isolated from acid mine drainage sites in the eastern United States. Three genomes are Archaea, including two from the phylum Thermoproteota and one from Euryarchaeota.
Christen Grettenberger +5 more
core +1 more source
, 2023 We assembled a total of 444 medium- to high-quality metagenome-assembled genomes (MAGs) with completeness > 50% and contamination < 5%, from floc-associated bacterial community (FAB) of a commercial shrimp biofloc aquaculture system, located in South ...
Yeonjung Lim (6645230) +5 more
core +1 more source
happi: a hierarchical approach to pangenomics inference
Genome Biology, 2023 Recovering metagenome-assembled genomes (MAGs) from shotgun sequencing data is an increasingly common task in microbiome studies, as MAGs provide deeper insight into the functional potential of both culturable and non-culturable microorganisms.
Pauline Trinh +2 more
doaj +1 more source
Terabase-Scale Coassembly of a Tropical Soil Microbiome
Microbiology Spectrum, 2023 Petabases of environmental metagenomic data are publicly available, presenting an opportunity to characterize complex environments and discover novel lineages of life.
Robert Riley +16 more
doaj +1 more source
Metagenome assembled genomes inventory.
, 2022 Table describing the completeness and degree of contamination of the metagenome assembled genomes generated in this study. (CSV)
Rebecca M. Brotman (8552301) +4 more
core +1 more source
Metagenome-assembled genomes from sugarcane mill mud
Microbiology Resource Announcements, 2023 ABSTRACT The genomes of 11 bacteria and 3 archaea were assembled from metagenomic DNA extracted from sugarcane mill mud. These metagenome-assembled genomes ranged from 1.79 to 6.45 Mb, with 2,263 to 5,551 predicted proteins, 80.65% to 100% genome completeness, and 43.19% to 68.02% G+C content.
Minori Uchimiya +3 more
openaire +2 more sources
CheckV assesses the quality and completeness of metagenome-assembled viral genomes [PDF]
Nature Biotechnology, 2020 Abstract Millions of new viral sequences have been identified from metagenomes, but the quality and completeness of these sequences vary considerably. Here we present CheckV, an automated pipeline for identifying closed viral genomes, estimating the completeness of genome fragments and removing flanking host regions from integrated ...
Stephen Nayfach +5 more
openaire +8 more sources