Results 41 to 50 of about 503,920 (237)
Microbiology Resource Announcements, 2020 Crude oil-polluted sites are a global threat, raising the demand for remediation worldwide. Here, we investigated a crude oil metagenome from a former borehole in Wietze, Germany, and reconstructed 42 metagenome-assembled genomes, many of which contained genes involved in crude oil degradation with a high potential for bioremediation purposes.
Eze, Michael O. +8 more
openaire +5 more sources
MetaPOAP: presence or absence of metabolic pathways in metagenome-assembled genomes [PDF]
Bioinformatics, 2018 Abstract Summary Genome-resolved metagenomics allows the construction of draft microbial genomes from short-read shotgun metagenomics (Metagenome-Assembled Genomes, or MAGs); however, even high-quality MAGs are typically somewhat incomplete and contain a small amount of contaminant sequence, making ...
Lewis M. Ward +2 more
openaire +4 more sources
Genomic characterization of two metagenome-assembled genomes of Tropheryma whipplei from China
Frontiers in Cellular and Infection Microbiology, 2022 Whipple’s disease is a rare chronic systemic disease that affects almost any organ system of the body caused by the intracellular bacterium Tropheryma whipplei, which is found ubiquitously in the environment. Sequencing of the T. whipplei genome has revealed that it has a reduced genome (0.93 Mbp), a characteristic shared with other intracellular ...
Zhongdong Lv +17 more
openaire +3 more sources
mOTUpan: a robust Bayesian approach to leverage metagenome assembled genomes for core-genome estimation [PDF]
NAR Genomics and Bioinformatics, 2021 Abstract Recent advances in sequencing and bioinformatics have expanded the tree of life by providing genomes for uncultured environmentally relevant clades, either through metagenome assembled genomes (MAGs) or single-cell assembled genomes (SAGs).
Moritz Buck +2 more
openaire +3 more sources
Nature Communications, 2022 Here, the authors construct 102 complete metagenome-assembled genomes (cMAGs) from Pacific Biosciences (PacBio) high-accuracy long-read (HiFi) metagenomic sequencing, showing as high nucleotide accuracy as reference genomes and revealing that regions ...
Chan Yeong Kim, Junyeong Ma, Insuk Lee
doaj +1 more source
, 2020 Metagenome Assembled Genomes (MAGs) from 16 Australian and 24 Global soils. For sample metadata see Supplementary Table 2 and for MAG metadata and taxonomic affiliation see Supplementary Table ...
Sean Bay (9224222)
core +1 more source
Metagenome-Assembled Genomes from Amazonian Soil Microbial Consortia
Microbiology Resource Announcements, 2022 Here, we report 17 metagenome-assembled genomes (MAGs) recovered from microbial consortia of forest and pasture soils in the Brazilian Eastern Amazon. The bacterial MAGs have the potential to act in important ecological processes, including carbohydrate degradation and sulfur and nitrogen cycling.
Jéssica A. Mandro +4 more
openaire +2 more sources
Microbiology Resource Announcements, 2018 Coastal regions experiencing declining dissolved oxygen are increasing in number and severity around the world. However, despite the importance of microbial metabolism in coastal hypoxia, few metagenomic surveys exist.
Thrash, J Cameron +8 more
openaire +5 more sources
Noncanonical Peloruside A Biosynthesis by an Uncultivated Verrucomicrobiota Symbiont
Angewandte Chemie, EarlyView.Noncanonical biochemistry of the peloruside PKS characterized in this work, comprising double bond generation by a noncanonical tridomain (blue), acetyl‐CoA recycling (orange), and proofreading systems (purple and yellow). The Z‐double bond is installed by TEB1 through O‐acetylation and acetate elimination. The acyl ligase PelB (AL, orange) selectively
Amy E. Fraley +11 more
wiley +2 more sources
Communications Biology, 2021 Anderson and Fernando use metagenomic binning approaches to reconstruct 2,809 microbial metagenome-assembled genomes from ruminants, and perform phylogenomic analyses on the biosynthetic gene clusters from over 8,000 total rumen microbial genomes.
Christopher L. Anderson +1 more
doaj +1 more source