Results 51 to 60 of about 503,920 (237)

Metagenome assembled genomes from hot sugarcane mill mud. [PDF]

Microbiol Resour Announc
ABSTRACT The genomes of six bacteria from the phylum Bacillota were assembled from metagenomic DNA extracted from sugarcane mill mud obtained immediately after heat treatment. These metagenome-assembled genomes were 94.5%–99.8% complete, with <2% contamination, and ranged from 2.6 Mb to 6.5 
Lapidus E, Uchimiya M, Hay A.
europepmc   +3 more sources

North Sea spring bloom-associated Gammaproteobacteria fill diverse heterotrophic niches

Environmental Microbiome, 2021
Background The planktonic bacterial community associated with spring phytoplankton blooms in the North Sea is responsible for a large amount of carbon turnover in an environment characterised by high primary productivity.
Ben Francis, Tim Urich, Annett Mikolasch, Hanno Teeling, Rudolf Amann   +4 more
doaj   +1 more source

MAGNETO: An Automated Workflow for Genome-Resolved Metagenomics

mSystems, 2022
Metagenome-assembled genomes (MAGs) represent individual genomes recovered from metagenomic data. MAGs are extremely useful to analyze uncultured microbial genomic diversity, as well as to characterize associated functional and metabolic potential in ...
Benjamin Churcheward, Maxime Millet, Audrey Bihouée, Guillaume Fertin, Samuel Chaffron   +4 more
doaj   +1 more source

Borup Fiord Pass - Metagenome Assembled Genomes (MAGs)

, 2020
These are the Metagenome Assembled Genomes generated and presented for a publication in preparation to AEM.These data were generated from samples collected at Borup Fiord Pass between 2014 and ...
Christopher Trivedi (7342979)
core   +1 more source

Genomes

, 2022
Pure culture and metagenome-assembled genomes generated in this study in fasta format.
Cameron Thrash (5587934)
core   +1 more source

Robust taxonomic classification of uncharted microbial sequences and bins with CAT and BAT

Genome Biology, 2019
Current-day metagenomics analyses increasingly involve de novo taxonomic classification of long DNA sequences and metagenome-assembled genomes. Here, we show that the conventional best-hit approach often leads to classifications that are too specific ...
F. A. Bastiaan von Meijenfeldt, Ksenia Arkhipova, Diego D. Cambuy, Felipe H. Coutinho, Bas E. Dutilh   +4 more
doaj   +1 more source

A Comprehensive Microbial Gene Catalog of the Human Airway Microbiome Across Anatomical Sites and Geographic Regions

Advanced Science, EarlyView.
An integrated Human Airway Microbiome Gene Catalog (iHAMGC) is constructed from 12,273 metagenomic airway samples, providing a high‐resolution reference of respiratory microbial genes. The catalog enables systematic exploration of taxonomic and functional variation across airway niches and geographic regions, revealing site‐specific and region ...
Qing Zhang, Dashu Li, Bo Liu, Yue Zhang, Min Li, Ruochun Guo, Yawen Ni, Shibin Chen, Biao Ni, Lijie Qiu, Guorui Xing, He Dong, Qiulong Yan, Shenghui Li, Xiaohui Zou, Bin Cao   +15 more
wiley   +1 more source

Metagenome assembled genomes (MAGs)

, 2021
Metagenome assembled genomes (MAGs) generated by taking raw reads from 58 samples that were quality-score filtered, trimmed, adapters removed, entropy-filtered (entropy =0.3), and PhiX reads removed with the program BBDuk v.38.84.
Stephanie Rosales (822375)
core   +1 more source

Gut Microbial Release of Ferulic Acid From Germinated Quinoa Alleviates Obesity‐Associated Cognitive Impairment by Activating Hippocampal Mitophagy Associated with PINK1/Parkin Pathway

Advanced Science, EarlyView.
Liberation of ferulic acid by gut microbial feruloyl esterase mediates cognitive enhancement of germinated quinoa (GQF) on obese mice. Ferulic acid enriched in GQF is released by gut microbes Roseburia hominis and R. intestinalis and subsequently mediates the neuroprotective effects of GQF on obesity‐induced cognitive decline by activating hippocampal ...
Yongli Lan, Wengang Zhang, Lei Wang, Shiyang Zhao, Yujie Song, Xinze Wang, Yutang Wang, Xijuan Yang, Shaobo Ma, Junlin Ge, Rui Guo, Xuebo Liu   +11 more
wiley   +1 more source

Unveiling the Taxonomic Diversity and Unprecedented Biosynthetic Treasure of the Phylum Myxococcota

Advanced Science, EarlyView.
Natural products remain vital sources of therapeutics, and the phylum Myxococcota constitutes an especially rich reservoir for them. Based on decades of microbiological efforts, we present 154 new Myxococcota genomes and revise taxonomy quadrupling the number of families and genera.
Amay Ajaykumar Agrawal, Ronald Garcia, Guangyi Chen, Chantal D. Bader, Peter Sullivan, Alexander Popoff, Daniel Krug, Maja Hunter, Sebastian Walesch, Emilia Oueis, Christine Frank, Haowen Zhao, Joachim J. Hug, Sebastian Keller, Pascal Hirsch, Azat Tagirdzhanov, Tatiana Malygina, Mary Victory E. Gutierrez, Alexey Gurevich, Judith Boldt, Boyke Bunk, Jörg Overmann, Ulrich Nübel, Andreas Keller, Olga V. Kalinina, Rolf Müller   +25 more
wiley   +1 more source