Results 71 to 80 of about 537,462 (223)
Nature CommunicationsMetagenomic shotgun sequencing data from over 600,000 metagenomes are publicly available in repositories such as NCBI’s Sequence Read Archive (SRA).
Eike Matthias Wacker +3 more
doaj +1 more source
Advanced Science, EarlyView.This study identifies GAP2, a bioactive polysaccharide fraction derived from Ganoderma applanatum, as a postbiotic inducer that repairs intestinal barrier damage in a gut microbiota‐dependent manner. GAP2 enriches Phocaeicola vulgatus, which degrades GAP2 and promotes tridecylic acid production, triggering Rho/CDC42 signaling and tight‐junction ...
Chuan Zhang +10 more
wiley +1 more source
Metagenome-Assembled Genome of a Novel Cyclobacteriaceae Epibiont of a Heterotrophic Diazotroph
Microbiology Resource Announcements, 2023 Here, we describe the metagenome-assembled genome (MAG) HetDA_MAG_SS2, in the family Cyclobacteriaceae . It was found in association with a HetDA cyanobiont isolated from a Station ALOHA Trichodesmium colony.
Michelle DeMers +3 more
openaire +2 more sources
Mash Screen: high-throughput sequence containment estimation for genome discovery
Genome Biology, 2019 The MinHash algorithm has proven effective for rapidly estimating the resemblance of two genomes or metagenomes. However, this method cannot reliably estimate the containment of a genome within a metagenome.
Brian D. Ondov +6 more
doaj +1 more source
Metagenome assembled genomes from hot sugarcane mill mud. [PDF]
Microbiol Resour AnnouncABSTRACT The genomes of six bacteria from the phylum Bacillota were assembled from metagenomic DNA extracted from sugarcane mill mud obtained immediately after heat treatment. These metagenome-assembled genomes were 94.5%–99.8% complete, with <2% contamination, and ranged from 2.6 Mb to 6.5
Lapidus E, Uchimiya M, Hay A.
europepmc +3 more sources
Chicken cecal metagenome assembled genomes
, 2019 We sequenced DNA from cecal contents samples taken from 24 chickens belonging to either a fast or slower growing breed consuming either a vegetable-only diet or a diet containing fish meal.
Glendinning, Laura; id_orcid +6 more
core +1 more source
Evaluating and improving the representation of bacterial contents in long-read metagenome assemblies
Genome BiologyBackground In the metagenomic assembly of a microbial community, abundant species are often thought to assemble well given their deeper sequencing coverage. This conjuncture is rarely tested or evaluated in practice.
Xiaowen Feng, Heng Li
doaj +1 more source
Microbiome, 2021 Background Obtaining high-quality (HQ) reference genomes from microbial communities is crucial for understanding the phylogeny and function of uncultured microbes in complex microbial ecosystems.
Koji Arikawa +8 more
doaj +1 more source
Novel insights into the pig gut microbiome using metagenome-assembled genomes
Microbiology Spectrum, 2022 Abstract Pigs are among the most numerous and intensively farmed food-producing animals in the world. The gut microbiome plays an important role in the health and performance of swine and changes rapidly after weaning.
Devin B. Holman +3 more
openaire +3 more sources
KEMET – A python tool for KEGG Module evaluation and microbial genome annotation expansion
Computational and Structural Biotechnology Journal, 2022 Background: The rapid accumulation of sequencing data from metagenomic studies is enabling the generation of huge collections of microbial genomes, with new challenges for mapping their functional potential.
Matteo Palù +6 more
doaj +1 more source