Results 1 to 10 of about 118,651 (117)
iMeta, 2022 It has been proven that three‐dimensional protein structures could be modeled by supplementing homologous sequences with metagenome sequences. Even though a large volume of metagenome data is utilized for such purposes, a significant proportion of ...
Pengshuo Yang, Kang Ning
exaly +2 more sources
TOFU-MAaPO: fast, scalable and reproducible analysis of large metagenome sequence data from the Sequence Read Archive [PDF]
Nature CommunicationsMetagenomic shotgun sequencing data from over 600,000 metagenomes are publicly available in repositories such as NCBI’s Sequence Read Archive (SRA).
Eike Matthias Wacker +3 more
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Frontiers in Microbiology, 2022 Metagenome assembly is a core yet methodologically challenging step for taxonomic classification and functional annotation of a microbiome. This study aims to generate the high-resolution human gut metagenome using both Illumina and Nanopore platforms ...
Lianwei Ye, Ning Dong, Wenguang Xiong
exaly +3 more sources
Phage therapy for Clostridioides difficile infection
Frontiers in Immunology, 2022 Clostridioides difficile is endemic in the intestinal tract of healthy people. However, it is responsible for many healthcare-associated infections, such as nosocomial diarrhea following antibiotic treatment.
Kosuke Fujimoto +3 more
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mSystems, 2023 Several studies have compared metagenome inference performance in different human body sites; however, none specifically reported on the vaginal microbiome.
Kayla A. Carter +8 more
doaj +1 more source
Integrating pan-genome with metagenome for microbial community profiling
Computational and Structural Biotechnology Journal, 2021 Advances in sequencing technology have led to the increased availability of genomes and metagenomes, which has greatly facilitated microbial pan-genome and metagenome analysis in the community.
Chaofang Zhong +3 more
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Persistent memory as an effective alternative to random access memory in metagenome assembly
BMC Bioinformatics, 2022 Background The assembly of metagenomes decomposes members of complex microbe communities and allows the characterization of these genomes without laborious cultivation or single-cell metagenomics. Metagenome assembly is a process that is memory intensive
Jingchao Sun +5 more
doaj +1 more source
NeSSM: a Next-generation Sequencing Simulator for Metagenomics. [PDF]
PLoS ONE, 2013 BackgroundMetagenomics can reveal the vast majority of microbes that have been missed by traditional cultivation-based methods. Due to its extremely wide range of application areas, fast metagenome sequencing simulation systems with high fidelity are in ...
Ben Jia +5 more
doaj +1 more source
Terabase-Scale Coassembly of a Tropical Soil Microbiome
Microbiology Spectrum, 2023 Petabases of environmental metagenomic data are publicly available, presenting an opportunity to characterize complex environments and discover novel lineages of life.
Robert Riley +16 more
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TAMA: improved metagenomic sequence classification through meta-analysis
BMC Bioinformatics, 2020 Background Microorganisms are important occupants of many different environments. Identifying the composition of microbes and estimating their abundance promote understanding of interactions of microbes in environmental samples.
Mikang Sim +4 more
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