Results 31 to 40 of about 140,801 (215)

Shotgun metagenome sequencing and recovery of 444 metagenome-assembled microbial genomes from the biofloc aquaculture system

, 2023
We assembled a total of 444 medium- to high-quality metagenome-assembled genomes (MAGs) with completeness > 50% and contamination < 5%, from floc-associated bacterial community (FAB) of a commercial shrimp biofloc aquaculture system, located in South ...
Yeonjung Lim (6645230), Jang-Cheon Cho (518240), Meora Rajeev (11485592), Ilsuk Jung (16468119), Suhyun Kim (226047), Ilnam Kang (518235)   +5 more
core   +1 more source

RNA sequencing dataset characterizing transcriptomic responses to dietary changes in Caenorhabditis elegans

Data in Brief, 2019
Transcriptome analysis using next generation sequencing (NGS) technology provides the capability to understand global changes in gene expression throughout a range of tissue samples. The nematode Caenorhabditis elegans (C.
Scott T. Schumacker, Chloe A.M. Chidester, Raymond A. Enke, Matthew R. Marcello   +3 more
doaj   +1 more source

Inference-based accuracy of metagenome prediction tools varies across sample types and functional categories

Microbiome, 2020
Background Despite recent decreases in the cost of sequencing, shotgun metagenome sequencing remains more expensive compared with 16S rRNA amplicon sequencing.
Shan Sun, Roshonda B. Jones, Anthony A. Fodor   +2 more
doaj   +1 more source

MetaBAT, an efficient tool for accurately reconstructing single genomes from complex microbial communities [PDF]

PeerJ, 2015
Grouping large genomic fragments assembled from shotgun metagenomic sequences to deconvolute complex microbial communities, or metagenome binning, enables the study of individual organisms and their interactions.
Dongwan D. Kang, Jeff Froula, Rob Egan, Zhong Wang   +3 more
doaj   +2 more sources

Evaluating the number of different genomes in a metagenome by means of the compositional spectra approach.

PLoS ONE, 2020
Determination of metagenome composition is still one of the most interesting problems of bioinformatics. It involves a wide range of mathematical methods, from probabilistic models of combinatorics to cluster analysis and pattern recognition techniques ...
Valery Kirzhner, Dvora Toledano-Kitai, Zeev Volkovich   +2 more
doaj   +1 more source

Metagenome sequencing and 768 microbial genomes from cold seep in South China Sea

Scientific Data, 2022
Measurement(s) metagenome assembled genomes Technology Type(s) metagenome sequencing and genome binning Sample Characteristic - Organism microorganism Sample Characteristic - Environment marine cold seep biome Sample Characteristic - Location South China
Huan Zhang, Minxiao Wang, Hao Wang, Hao Chen, Lei Cao, Zhaoshan Zhong, Chao Lian, Li Zhou, Chaolun Li   +8 more
doaj   +1 more source

Metagenomic sequence of saline desert microbiota from wild ass sanctuary, Little Rann of Kutch, Gujarat, India

Genomics Data, 2015
We report Metagenome from the saline desert soil sample of Little Rann of Kutch, Gujarat State, India. Metagenome consisted of 633,760 sequences with size 141,307,202 bp and 56% G + C content.
Rajesh Patel, Vishal Mevada, Dhaval Prajapati, Pravin Dudhagara, Prakash Koringa, C.G. Joshi   +5 more
doaj   +1 more source

Combining host and rumen metagenome profiling for selection in sheep: prediction of methane, feed efficiency, production, and health traits

Genetics Selection Evolution, 2023
Background Rumen microbes break down complex dietary carbohydrates into energy sources for the host and are increasingly shown to be a key aspect of animal performance.
Melanie K. Hess, Larissa Zetouni, Andrew S. Hess, Juliana Budel, Ken G. Dodds, Hannah M. Henry, Rudiger Brauning, Alan F. McCulloch, Sharon M. Hickey, Patricia L. Johnson, Sara Elmes, Janine Wing, Brooke Bryson, Kevin Knowler, Dianne Hyndman, Hayley Baird, Kathryn M. McRae, Arjan Jonker, Peter H. Janssen, John C. McEwan, Suzanne J. Rowe   +20 more
doaj   +1 more source

metagenome-atlas/atlas: Fix eggNOGmapper

, 2020
ATLAS - Three commands to start analysing your metagenome ...
Silas Kieser, Jackson M. Tsuji, Richard Allen White III, Christopher Bottoms, Joe Brown, Sean M. Colby, Vladimir Mikryukov, wangzc, Chris Overall, Mattias de Hollander, C. Titus Brown, Colin Brislawn   +11 more
core   +1 more source

A database of animal metagenomes

Scientific Data, 2022
Measurement(s) Metagenome metadata Technology Type(s) Collection and integration the metagenomic information of multiple animal species Factor Type(s) animal Sample Characteristic - Organism animal Sample Characteristic - Environment metagenome Sample ...
Ruirui Hu, Rui Yao, Lei Li, Yueren Xu, Bingbing Lei, Guohao Tang, Haowei Liang, Yunjiao Lei, Cunyuan Li, Xiaoyue Li, Kaiping Liu, Limin Wang, Yunfeng Zhang, Yue Wang, Yuying Cui, Jihong Dai, Wei Ni, Ping Zhou, Baohua Yu, Shengwei Hu   +19 more
doaj   +1 more source