Results 21 to 30 of about 157,682 (311)

Mobile resistome of human gut and pathogen drives anthropogenic bloom of antibiotic resistance [PDF]

, 2020
BACKGROUND:The impact of human activities on the environmental resistome has been documented in many studies, but there remains the controversial question of whether the increased antibiotic resistance observed in anthropogenically impacted environments ...
Bu, Ji-Hye, Cha, Chang-Jun, Cha, Ju-Hee, Hwang, Eun-Mi, Kim, Dae-Wi, Kim, Yong-Seok, Lee, Do-Hoon, Lee, Kihyun, Quince, Christopher, Seong, Hoon Je, Sul, Woo Jun, Thawng, Cung Nawl, Wellington, Elizabeth M. H.   +12 more
core   +1 more source

Evaluating the number of different genomes in a metagenome by means of the compositional spectra approach.

PLoS ONE, 2020
Determination of metagenome composition is still one of the most interesting problems of bioinformatics. It involves a wide range of mathematical methods, from probabilistic models of combinatorics to cluster analysis and pattern recognition techniques ...
Valery Kirzhner, Dvora Toledano-Kitai, Zeev Volkovich   +2 more
doaj   +1 more source

Bacterial tag encoded FLX titanium amplicon pyrosequencing (bTEFAP) based assessment of prokaryotic diversity in metagenome of Lonar soda lake, India

Genomics Data, 2015
Bacterial diversity and archaeal diversity in metagenome of the Lonar soda lake sediment were assessed by bacterial tag-encoded FLX amplicon pyrosequencing (bTEFAP).
Pravin Dudhagara, Anjana Ghelani, Rajesh Patel, Rajesh Chaudhari, Shreyas Bhatt   +4 more
doaj   +1 more source

Inference-based accuracy of metagenome prediction tools varies across sample types and functional categories

Microbiome, 2020
Background Despite recent decreases in the cost of sequencing, shotgun metagenome sequencing remains more expensive compared with 16S rRNA amplicon sequencing.
Shan Sun, Roshonda B. Jones, Anthony A. Fodor   +2 more
doaj   +1 more source

Extreme Scale De Novo Metagenome Assembly [PDF]

, 2018
Metagenome assembly is the process of transforming a set of short, overlapping, and potentially erroneous DNA segments from environmental samples into the accurate representation of the underlying microbiomes's genomes. State-of-the-art tools require big
Arndt, Bill, Buluc, Aydin, Egan, Rob, Georganas, Evangelos, Goltsman, Eugene, Hofmeyr, Steven, Oliker, Leonid, Tritt, Andrew, Yelick, Katherine   +8 more
core   +3 more sources

RNA sequencing dataset characterizing transcriptomic responses to dietary changes in Caenorhabditis elegans

Data in Brief, 2019
Transcriptome analysis using next generation sequencing (NGS) technology provides the capability to understand global changes in gene expression throughout a range of tissue samples. The nematode Caenorhabditis elegans (C.
Scott T. Schumacker, Chloe A.M. Chidester, Raymond A. Enke, Matthew R. Marcello   +3 more
doaj   +1 more source

Hiding in plain sight: the globally distributed bacterial candidate phylum PAUC34f [PDF]

, 2020
© The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Chen, M. L., Becraft, E. D., Pachiadaki, M., Brown, J. M., Jarett, J. K., Gasol, J. M., Ravin, N.
Becraft, Eric D., Brown, Julia M., Chen, Michael L., Gasol, Josep M., Herndl, Gerhard J., Jarett, Jessica K., Moser, Duane P., Nunoura, Takuro, Pachiadaki, Maria G., Ravin, Nikolai V., Stepanauskas, Ramunas, Woyke, Tanja   +11 more
core   +2 more sources

Metagenome sequencing and 768 microbial genomes from cold seep in South China Sea

Scientific Data, 2022
Measurement(s) metagenome assembled genomes Technology Type(s) metagenome sequencing and genome binning Sample Characteristic - Organism microorganism Sample Characteristic - Environment marine cold seep biome Sample Characteristic - Location South China
Huan Zhang, Minxiao Wang, Hao Wang, Hao Chen, Lei Cao, Zhaoshan Zhong, Chao Lian, Li Zhou, Chaolun Li   +8 more
doaj   +1 more source

Metagenomic sequence of saline desert microbiota from wild ass sanctuary, Little Rann of Kutch, Gujarat, India

Genomics Data, 2015
We report Metagenome from the saline desert soil sample of Little Rann of Kutch, Gujarat State, India. Metagenome consisted of 633,760 sequences with size 141,307,202 bp and 56% G + C content.
Rajesh Patel, Vishal Mevada, Dhaval Prajapati, Pravin Dudhagara, Prakash Koringa, C.G. Joshi   +5 more
doaj   +1 more source

Combining host and rumen metagenome profiling for selection in sheep: prediction of methane, feed efficiency, production, and health traits

Genetics Selection Evolution, 2023
Background Rumen microbes break down complex dietary carbohydrates into energy sources for the host and are increasingly shown to be a key aspect of animal performance.
Melanie K. Hess, Larissa Zetouni, Andrew S. Hess, Juliana Budel, Ken G. Dodds, Hannah M. Henry, Rudiger Brauning, Alan F. McCulloch, Sharon M. Hickey, Patricia L. Johnson, Sara Elmes, Janine Wing, Brooke Bryson, Kevin Knowler, Dianne Hyndman, Hayley Baird, Kathryn M. McRae, Arjan Jonker, Peter H. Janssen, John C. McEwan, Suzanne J. Rowe   +20 more
doaj   +1 more source