Results 21 to 30 of about 140,801 (215)
metagenome-atlas/atlas: v2.12.0
, 2022 What's Changed GTDB-tk requires rule extract_gtdb to run first by @Waschina in https://github.com/metagenome-atlas/atlas/pull/551 use Galah instead of Drep use bbsplit for mapping to genomes (maybe move to minimap in future) faster gene catalogs ...
Silas Kieser +16 more
core +1 more source
metagenome-atlas/atlas: GTDB v 207 low memory profiling
, 2022 New Features GTDB version 207 Low memory taxonomic annotation Minor changes Fix Typos by @roshni-b in https://github.com/metagenome-atlas/atlas/pull/520 Speed up DRAM annotations by @jmtsuji in https://github.com/metagenome-atlas/atlas/pull/534 Full ...
Silas Kieser +15 more
core +1 more source
Integrating pan-genome with metagenome for microbial community profiling
Computational and Structural Biotechnology Journal, 2021 Advances in sequencing technology have led to the increased availability of genomes and metagenomes, which has greatly facilitated microbial pan-genome and metagenome analysis in the community.
Chaofang Zhong +3 more
doaj +1 more source
, 2022 ATLAS - Three commands to start analyzing your metagenome ...
Silas Kieser +14 more
core +1 more source
Enhanced mitochondrial activity reshapes a gut microbiota profile that delays NASH progression
Hepatology, EarlyView., 2022 Improved mitochondrial activity, due to the lack of methylation‐controlled J protein (MCJ), creates a specific microbiota signature that when transferred through cecal microbiota transplantation delays NASH progression by restoring the gut‐liver axis and enhancing hepatic fatty acid oxidation.
María Juárez‐Fernández +18 more
wiley +1 more source
Persistent memory as an effective alternative to random access memory in metagenome assembly
BMC Bioinformatics, 2022 Background The assembly of metagenomes decomposes members of complex microbe communities and allows the characterization of these genomes without laborious cultivation or single-cell metagenomics. Metagenome assembly is a process that is memory intensive
Jingchao Sun +5 more
doaj +1 more source
TAMA: improved metagenomic sequence classification through meta-analysis
BMC Bioinformatics, 2020 Background Microorganisms are important occupants of many different environments. Identifying the composition of microbes and estimating their abundance promote understanding of interactions of microbes in environmental samples.
Mikang Sim +4 more
doaj +1 more source
NeSSM: a Next-generation Sequencing Simulator for Metagenomics. [PDF]
PLoS ONE, 2013 BackgroundMetagenomics can reveal the vast majority of microbes that have been missed by traditional cultivation-based methods. Due to its extremely wide range of application areas, fast metagenome sequencing simulation systems with high fidelity are in ...
Ben Jia +5 more
doaj +1 more source
Terabase-Scale Coassembly of a Tropical Soil Microbiome
Microbiology Spectrum, 2023 Petabases of environmental metagenomic data are publicly available, presenting an opportunity to characterize complex environments and discover novel lineages of life.
Robert Riley +16 more
doaj +1 more source
metagenome-atlas/atlas: Bug fixes Drep
, 2021 ATLAS - Three commands to start analyzing your metagenome ...
Silas Kieser +11 more
core +1 more source