Results 11 to 20 of about 129,780 (292)
metagenome-atlas/atlas: v2.9.0
, 2022 What's Changed Start an atlas project from public data in SRA Docs Make atlas ready for python 3.10 https://github.com/metagenome-atlas/atlas/pull/498 Add strain profiling using inStrain You can run atlas run genomes strains New Contributors @alienzj
Silas Kieser +14 more
core +1 more source
Metagenomics and antibiotics [PDF]
Clinical Microbiology and Infection, 2012 Most of the bacterial species that form part of the biosphere have never been cultivated. In this situation, a comprehensive study of bacterial communities requires the utilization of non-culture-based methods, which have been named metagenomics.
Garmendia, L. +3 more
openaire +2 more sources
DNA Research, 2022 Abstract Various microorganisms exist in environments, and each of which has an optimal growth temperature (OGT). The relationship between genomic information and OGT of each species has long been studied, and one such study revealed that OGT of prokaryotes can be accurately predicted based on the fraction of seven ...
Masaomi Kurokawa +6 more
openaire +2 more sources
metagenome-atlas/atlas: v2.12.0
, 2022 What's Changed GTDB-tk requires rule extract_gtdb to run first by @Waschina in https://github.com/metagenome-atlas/atlas/pull/551 use Galah instead of Drep use bbsplit for mapping to genomes (maybe move to minimap in future) faster gene catalogs ...
Silas Kieser +16 more
core +1 more source
Enhanced mitochondrial activity reshapes a gut microbiota profile that delays NASH progression
Hepatology, EarlyView., 2022 Improved mitochondrial activity, due to the lack of methylation‐controlled J protein (MCJ), creates a specific microbiota signature that when transferred through cecal microbiota transplantation delays NASH progression by restoring the gut‐liver axis and enhancing hepatic fatty acid oxidation.
María Juárez‐Fernández +18 more
wiley +1 more source
, 2022 ATLAS - Three commands to start analyzing your metagenome ...
Silas Kieser +14 more
core +1 more source
, 2023 We assembled a total of 444 medium- to high-quality metagenome-assembled genomes (MAGs) with completeness > 50% and contamination < 5%, from floc-associated bacterial community (FAB) of a commercial shrimp biofloc aquaculture system, located in South ...
Yeonjung Lim (6645230) +5 more
core +1 more source
Metagenome-assembled-genomes (MAGs)
, 2022 MAGs were constructed using snakemake metagenome workflow in anvi'o (Eren et al., 2015). A detailed explanation on the workflow (such as the softwares used in anvi'o) can be found in the supplementary material of the paper.
Ömer Coskun (9725927)
core +1 more source
From short to long: The impact of read length on metagenome assembly and binning
Methods in Ecology and EvolutionMetagenome sequencing not only plays a pivotal role in unravelling the genetic diversity and functional potential of microbial communities but also facilitates the discovery of genome context for microbial dark matter.
Xi Peng +7 more
doaj +2 more sources
Nature Reviews Genetics, 2019 Clinical metagenomic next-generation sequencing (mNGS), the comprehensive analysis of microbial and host genetic material (DNA and RNA) in samples from patients, is rapidly moving from research to clinical laboratories. This emerging approach is changing how physicians diagnose and treat infectious disease, with applications spanning a wide range of ...
Charles Y. Chiu, Steven A. Miller
openaire +4 more sources